Mercurial > repos > goeckslab > scimap_phenotyping

comparison scimap_spatial.py @ 1:dcfcad35e847 draft default tip

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/scimap commit d20d6f5d08b43de71182459f8a6452c564a5becc
author goeckslab
date Mon, 29 Aug 2022 23:55:18 +0000
parents 7ed4b55b11f7
children
comparison
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0:7ed4b55b11f7 1:dcfcad35e847
43 if v == '': 43 if v == '':
44 options[k] = None 44 options[k] = None
45 45
46 tool_func(adata, **options) 46 tool_func(adata, **options)
47 47
48 if tool == 'spatial_lda':
49 adata.uns.pop('spatial_lda_model')
50
48 adata.write(output) 51 adata.write(output)
49 52
50 53
51 if __name__ == '__main__': 54 if __name__ == '__main__':
52 aparser = argparse.ArgumentParser() 55 aparser = argparse.ArgumentParser()