Mercurial > repos > goeckslab > scimap_phenotyping

diff mcmicro_to_anndata.py @ 2:ce22e846c5e4 draft

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/scimap commit 9fb5578191db8a559191e45156cfb95350f01aea
author goeckslab
date Mon, 10 Jun 2024 18:44:25 +0000
parents 7ed4b55b11f7
children
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--- a/mcmicro_to_anndata.py	Mon Aug 29 23:55:18 2022 +0000
+++ b/mcmicro_to_anndata.py	Mon Jun 10 18:44:25 2024 +0000
@@ -31,7 +31,11 @@
         if v == '':
             options[k] = None
 
-    adata = sm.pp.mcmicro_to_scimap(image_path, drop_markers=drop_markers, **options)
+    adata = sm.pp.mcmicro_to_scimap(
+        image_path,
+        drop_markers=drop_markers,
+        **options
+    )
 
     adata.write(outfile)