Mercurial > repos > goeckslab > scimap_plotting

comparison main_macros.xml @ 0:834ee9481948 draft

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/scimap commit 9fb5578191db8a559191e45156cfb95350f01aea
author goeckslab
date Mon, 10 Jun 2024 18:45:07 +0000
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children c42e97dc5a3a
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-1:000000000000 0:834ee9481948
1 <macros>
2 <token name="@TOOL_VERSION@">2.1.0</token>
3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">20.01</token>
5
6 <xml name="scimap_requirements">
7 <requirements>
8 <container type="docker">quay.io/goeckslab/scimap:@TOOL_VERSION@</container>
9 <yield />
10 </requirements>
11 </xml>
12
13 <xml name="macro_stdio">
14 <stdio>
15 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
16 </stdio>
17 </xml>
18 <xml name="citations">
19 <citations>
20 <citation type="doi">10.1158/2159-8290.CD-21-1357</citation>
21 </citations>
22 </xml>
23 <xml name="scimap_spatial_options" token_label="spatial_aggregate">
24 <section name="options" title="Advanced Options" expanded="false">
25 <param argument="x_coordinate" type="text" value="X_centroid" optional="false" label="Column name containing the x-coordinates values" />
26 <param argument="y_coordinate" type="text" value="Y_centroid" optional="false" label="Column name containing the y-coordinates values" />
27 <yield/>
28 <param argument="imageid" type="text" value="imageid" optional="true" label="Column name of the column containing the image id" />
29 <param argument="subset" type="text" value="" optional="true" label="Imageid of a single image to be subsetted for analyis" />
30 <param argument="label" type="text" value="@LABEL@" optional="true" label="Key for the returned data" help="Stored in adata.obs" />
31 </section>
32 </xml>
33 </macros>