Mercurial > repos > goeckslab > squidpy

comparison squidpy_spatial.xml @ 2:4a058bd23a12 draft

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/squidpy commit ae0f7f9e0f265031ce1a9c1cadea109b0e1b81aa
author goeckslab
date Mon, 29 Apr 2024 20:42:57 +0000
parents bad34051dc8a
children d30ef0613122
comparison
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1:bad34051dc8a 2:4a058bd23a12
80 </when> 80 </when>
81 <when value="co_occurrence"> 81 <when value="co_occurrence">
82 <param argument="cluster_key" type="text" value="" optional="false" label="Key in anndata.AnnData.obs where clustering is stored" /> 82 <param argument="cluster_key" type="text" value="" optional="false" label="Key in anndata.AnnData.obs where clustering is stored" />
83 <expand macro="squidpy_spatial_options"> 83 <expand macro="squidpy_spatial_options">
84 <param argument="spatial_key" type="text" value="spatial" optional="false" label="The Key where spatial coordinates are stored" help="Key in `anndata.AnnData.obsm`." /> 84 <param argument="spatial_key" type="text" value="spatial" optional="false" label="The Key where spatial coordinates are stored" help="Key in `anndata.AnnData.obsm`." />
85 <param argument="n_steps" type="integer" value="50" label="Number of distance thresholds at which co-occurrence is computed" /> 85 <param argument="interval" type="integer" value="50" label="Number of distance thresholds at which co-occurrence is computed" />
86 <param argument="n_splits" type="integer" value="" optional="true" label="Number of splits in which to divide the spatial coordinates" help="In anndata.AnnData.obsm ['{spatial_key}']." /> 86 <param argument="n_splits" type="integer" value="" optional="true" label="Number of splits in which to divide the spatial coordinates" help="In anndata.AnnData.obsm ['{spatial_key}']." />
87 </expand> 87 </expand>
88 <expand macro="squidpy_plotting_options"> 88 <expand macro="squidpy_plotting_options">
89 <expand macro="squidpy_plotting_option_palette" /> 89 <expand macro="squidpy_plotting_option_palette" />
90 </expand> 90 </expand>