Mercurial > repos > goeckslab > squidpy
diff squidpy_spatial.xml @ 4:11ea000ad53f draft default tip
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/squidpy commit 389037ecb8da218c833d4e7ea8279215cc41d5bf
| author | goeckslab |
|---|---|
| date | Tue, 02 Jul 2024 19:54:29 +0000 |
| parents | d30ef0613122 |
| children |
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--- a/squidpy_spatial.xml Tue May 14 21:54:05 2024 +0000 +++ b/squidpy_spatial.xml Tue Jul 02 19:54:29 2024 +0000 @@ -17,9 +17,8 @@ --anndata '$anndata' --output '$output' #if $analyses.selected_tool in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']: - --output_plot "`pwd`/image.png" + --output_plot image.png #end if - ]]> </command> <configfiles> @@ -246,7 +245,7 @@ </inputs> <outputs> <data format="h5ad" name="output" label="Squidpy.gr.${analyses.selected_tool} on ${on_string}" /> - <data from_work_dir="image.png" format="png" name="output_plot" label="Squidpy.pl.${analyses.selected_tool} on ${on_string}" > + <data from_work_dir="figures/image.png" format="png" name="output_plot" label="Squidpy.pl.${analyses.selected_tool} on ${on_string}" > <filter>analyses['selected_tool'] in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']</filter> </data> </outputs>