# HG changeset patch
# User goeckslab
# Date 1719950069 0
# Node ID 11ea000ad53f581d28d811849cc60979eaa5f616
# Parent  d30ef0613122a6405623635a2314493855caa8b1
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/squidpy commit 389037ecb8da218c833d4e7ea8279215cc41d5bf

diff -r d30ef0613122 -r 11ea000ad53f main_macros.xml
--- a/main_macros.xml	Tue May 14 21:54:05 2024 +0000
+++ b/main_macros.xml	Tue Jul 02 19:54:29 2024 +0000
@@ -1,7 +1,7 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.4.1</token>
+    <token name="@TOOL_VERSION@">1.5.0</token>
     <token name="@PROFILE@">20.01</token>
-    <token name="@VERSION_SUFFIX@">1</token> 
+    <token name="@VERSION_SUFFIX@">0</token> 
 
     <xml name="macro_stdio">
         <stdio>
@@ -11,7 +11,7 @@
 
     <xml name="squidpy_requirements">
         <requirements>
-            <container type="docker">quay.io/goeckslab/squidpy:@TOOL_VERSION@</container>
+            <requirement type="package" version="@TOOL_VERSION@">squidpy</requirement>
         </requirements>
     </xml>
 
diff -r d30ef0613122 -r 11ea000ad53f squidpy_spatial.xml
--- a/squidpy_spatial.xml	Tue May 14 21:54:05 2024 +0000
+++ b/squidpy_spatial.xml	Tue Jul 02 19:54:29 2024 +0000
@@ -17,9 +17,8 @@
             --anndata '$anndata'
             --output '$output'
             #if $analyses.selected_tool in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']:
-            --output_plot "`pwd`/image.png"
+                 --output_plot image.png
             #end if
-
         ]]>
     </command>
     <configfiles>
@@ -246,7 +245,7 @@
     </inputs>
     <outputs>
         <data format="h5ad" name="output" label="Squidpy.gr.${analyses.selected_tool} on ${on_string}" />
-        <data from_work_dir="image.png" format="png" name="output_plot" label="Squidpy.pl.${analyses.selected_tool} on ${on_string}" >
+        <data from_work_dir="figures/image.png" format="png" name="output_plot" label="Squidpy.pl.${analyses.selected_tool} on ${on_string}" >
             <filter>analyses['selected_tool'] in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']</filter>
         </data>
     </outputs>
diff -r d30ef0613122 -r 11ea000ad53f test-data/imc_centrality_scores.png
Binary file test-data/imc_centrality_scores.png has changed
diff -r d30ef0613122 -r 11ea000ad53f test-data/imc_co_occurrence.png
Binary file test-data/imc_co_occurrence.png has changed
diff -r d30ef0613122 -r 11ea000ad53f test-data/imc_interaction_matrix.png
Binary file test-data/imc_interaction_matrix.png has changed
diff -r d30ef0613122 -r 11ea000ad53f test-data/imc_nhood_enrichment.png
Binary file test-data/imc_nhood_enrichment.png has changed
diff -r d30ef0613122 -r 11ea000ad53f test-data/imc_ripley.png
Binary file test-data/imc_ripley.png has changed