Mercurial > repos > goeckslab > squidpy
changeset 4:11ea000ad53f draft default tip
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/squidpy commit 389037ecb8da218c833d4e7ea8279215cc41d5bf
| author | goeckslab |
|---|---|
| date | Tue, 02 Jul 2024 19:54:29 +0000 |
| parents | d30ef0613122 |
| children | |
| files | main_macros.xml squidpy_spatial.xml test-data/imc_centrality_scores.png test-data/imc_co_occurrence.png test-data/imc_interaction_matrix.png test-data/imc_nhood_enrichment.png test-data/imc_ripley.png |
| diffstat | 7 files changed, 5 insertions(+), 6 deletions(-) [+] |
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--- a/main_macros.xml Tue May 14 21:54:05 2024 +0000 +++ b/main_macros.xml Tue Jul 02 19:54:29 2024 +0000 @@ -1,7 +1,7 @@ <macros> - <token name="@TOOL_VERSION@">1.4.1</token> + <token name="@TOOL_VERSION@">1.5.0</token> <token name="@PROFILE@">20.01</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">0</token> <xml name="macro_stdio"> <stdio> @@ -11,7 +11,7 @@ <xml name="squidpy_requirements"> <requirements> - <container type="docker">quay.io/goeckslab/squidpy:@TOOL_VERSION@</container> + <requirement type="package" version="@TOOL_VERSION@">squidpy</requirement> </requirements> </xml>
--- a/squidpy_spatial.xml Tue May 14 21:54:05 2024 +0000 +++ b/squidpy_spatial.xml Tue Jul 02 19:54:29 2024 +0000 @@ -17,9 +17,8 @@ --anndata '$anndata' --output '$output' #if $analyses.selected_tool in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']: - --output_plot "`pwd`/image.png" + --output_plot image.png #end if - ]]> </command> <configfiles> @@ -246,7 +245,7 @@ </inputs> <outputs> <data format="h5ad" name="output" label="Squidpy.gr.${analyses.selected_tool} on ${on_string}" /> - <data from_work_dir="image.png" format="png" name="output_plot" label="Squidpy.pl.${analyses.selected_tool} on ${on_string}" > + <data from_work_dir="figures/image.png" format="png" name="output_plot" label="Squidpy.pl.${analyses.selected_tool} on ${on_string}" > <filter>analyses['selected_tool'] in ['nhood_enrichment', 'centrality_scores', 'interaction_matrix', 'ligrec', 'ripley', 'co_occurrence']</filter> </data> </outputs>