Mercurial > repos > goeckslab > tabular_learner

comparison base_model_trainer.py @ 16:e82fd7fe796b draft default tip

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planemo upload for repository https://github.com/goeckslab/gleam commit 75eddf497315160aa1282ba1db839c4db0aed0c6
author goeckslab
date Fri, 23 Jan 2026 21:55:30 +0000
parents 01e7c5481f13
children
comparison
equal deleted inserted replaced
15:01e7c5481f13 16:e82fd7fe796b
119 ) 119 )
120 120
121 self.target = names[target_index] 121 self.target = names[target_index]
122 sample_id_column = getattr(self, "sample_id_column", None) 122 sample_id_column = getattr(self, "sample_id_column", None)
123 if sample_id_column: 123 if sample_id_column:
124 if str(sample_id_column).isdigit():
125 idx = int(sample_id_column) - 1
126 if 0 <= idx < len(names):
127 resolved = names[idx]
128 if sample_id_column in names:
129 LOG.warning(
130 "Sample ID column value '%s' matches a header, but Galaxy data_column "
131 "inputs are interpreted as 1-based indices; using column #%s header '%s'.",
132 sample_id_column,
133 idx + 1,
134 resolved,
135 )
136 LOG.info(
137 "Sample ID column '%s' not found; using column #%s header '%s' instead.",
138 sample_id_column,
139 idx + 1,
140 resolved,
141 )
142 sample_id_column = resolved
143 else:
144 raise ValueError(
145 f"Sample ID column index {sample_id_column} is invalid. "
146 f"Please select a number between 1 and {len(names)}."
147 )
124 sample_id_column = sample_id_column.replace(".", "_") 148 sample_id_column = sample_id_column.replace(".", "_")
125 self.sample_id_column = sample_id_column 149 self.sample_id_column = sample_id_column
126 else: 150 else:
127 self.sample_id_column = None 151 self.sample_id_column = None
128 self.sample_id_series = None 152 self.sample_id_series = None