Mercurial > repos > goeckslab > tabular_learner

comparison tabular_learner.xml @ 3:f6a65e05d6ec draft

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planemo upload for repository https://github.com/goeckslab/gleam commit b430f8b466655878c3bf63b053655fdbf039ddb0
author goeckslab
date Wed, 09 Jul 2025 01:12:48 +0000
parents 77c88226bfde
children 11fdac5affb3
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2:77c88226bfde 3:f6a65e05d6ec
26 #end if 26 #end if
27 #if $feature_selection 27 #if $feature_selection
28 --feature_selection 28 --feature_selection
29 #end if 29 #end if
30 #if $enable_cross_validation == "true" 30 #if $enable_cross_validation == "true"
31 --cross_validation 31 --cross_validation
32 #end if 32 #if $cross_validation_folds
33 #if $cross_validation_folds 33 --cross_validation_folds '$cross_validation_folds'
34 --cross_validation_folds '$cross_validation_folds' 34 #end if
35 #end if
36 #if $enable_cross_validation == "false"
37 --no_cross_validation
35 #end if 38 #end if
36 #if $remove_outliers 39 #if $remove_outliers
37 --remove_outliers 40 --remove_outliers
38 #end if 41 #end if
39 #if $remove_multicollinearity 42 #if $remove_multicollinearity
181 <test> 184 <test>
182 <param name="input_file" value="pcr.tsv"/> 185 <param name="input_file" value="pcr.tsv"/>
183 <param name="target_feature" value="11"/> 186 <param name="target_feature" value="11"/>
184 <param name="model_type" value="classification"/> 187 <param name="model_type" value="classification"/>
185 <param name="random_seed" value="42"/> 188 <param name="random_seed" value="42"/>
189 <param name="customize_defaults" value="true"/>
190 <param name="train_size" value="0.8"/>
191 <param name="normalize" value="true"/>
192 <param name="feature_selection" value="true"/>
193 <param name="enable_cross_validation" value="false"/>
194 <param name="remove_outliers" value="true"/>
195 <param name="remove_multicollinearity" value="true"/>
196 <output name="model" file="expected_model_classification_customized_cross_off.h5" compare="sim_size"/>
197 <output name="comparison_result">
198 <assert_contents>
199 <has_text text="Validation Result Summary" />
200 <has_text text="Test Results" />
201 <has_text text="Feature Importance" />
202 </assert_contents>
203 </output>
204 <output name="best_model_csv" value="expected_best_model_classification_customized_cross_off.csv" />
205 </test>
206 <test>
207 <param name="input_file" value="pcr.tsv"/>
208 <param name="target_feature" value="11"/>
209 <param name="model_type" value="classification"/>
210 <param name="random_seed" value="42"/>
186 <output name="model" file="expected_model_classification.h5" compare="sim_size"/> 211 <output name="model" file="expected_model_classification.h5" compare="sim_size"/>
187 <output name="comparison_result"> 212 <output name="comparison_result">
188 <assert_contents> 213 <assert_contents>
189 <has_text text="Validation Result Summary" /> 214 <has_text text="Validation Result Summary" />
190 <has_text text="Test Results" /> 215 <has_text text="Test Results" />