Mercurial > repos > goeckslab > tabular_learner

comparison tabular_learner.xml @ 14:edd515746388 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/gleam commit b7022441aaa1313a9104562ca621c465a203c245
author goeckslab
date Mon, 29 Dec 2025 20:34:38 +0000
parents 49f73a3c12f3
children
comparison
equal deleted inserted replaced
13:bf0df21a1ea3 14:edd515746388
5 </macros> 5 </macros>
6 <expand macro="python_requirements" /> 6 <expand macro="python_requirements" />
7 <command> 7 <command>
8 <![CDATA[ 8 <![CDATA[
9 python $__tool_directory__/pycaret_train.py --input_file '$input_file' --target_col '$target_feature' --output_dir '.' --random_seed '$random_seed' --n-jobs \${GALAXY_SLOTS:-1} 9 python $__tool_directory__/pycaret_train.py --input_file '$input_file' --target_col '$target_feature' --output_dir '.' --random_seed '$random_seed' --n-jobs \${GALAXY_SLOTS:-1}
10 #if $model_type == "classification" 10 #if $model_selection.model_type == "classification"
11 #if $classification_models 11 #if $model_selection.classification_models
12 --models '$classification_models' 12 --models '$model_selection.classification_models'
13 #end if 13 #end if
14 #end if 14 #end if
15 #if $model_type == "regression" 15 #if $model_selection.model_type == "regression"
16 #if $regression_models 16 #if $model_selection.regression_models
17 --models '$regression_models' 17 --models '$model_selection.regression_models'
18 #end if 18 #end if
19 #end if 19 #end if
20 #if $tune_model 20 #if $tune_model
21 --tune_model 21 --tune_model
22 #end if 22 #end if
23 #if $customize_defaults == "true" 23 #if $advanced_settings.customize_defaults == "true"
24 #if $train_size 24 #if $advanced_settings.train_size
25 --train_size '$train_size' 25 --train_size '$advanced_settings.train_size'
26 #end if 26 #end if
27 #if $normalize 27 #if $advanced_settings.normalize
28 --normalize 28 --normalize
29 #end if 29 #end if
30 #if $feature_selection 30 #if $advanced_settings.feature_selection
31 --feature_selection 31 --feature_selection
32 #end if 32 #end if
33 #if $enable_cross_validation == "true" 33 #if $advanced_settings.cross_validation.enable_cross_validation == "true"
34 --cross_validation 34 --cross_validation
35 #if $cross_validation_folds 35 #if $advanced_settings.cross_validation.cross_validation_folds
36 --cross_validation_folds '$cross_validation_folds' 36 --cross_validation_folds '$advanced_settings.cross_validation.cross_validation_folds'
37 #end if 37 #end if
38 #end if 38 #end if
39 #if $enable_cross_validation == "false" 39 #if $advanced_settings.cross_validation.enable_cross_validation == "false"
40 --no_cross_validation 40 --no_cross_validation
41 #end if 41 #end if
42 #if $remove_outliers 42 #if $advanced_settings.remove_outliers
43 --remove_outliers 43 --remove_outliers
44 #end if 44 #end if
45 #if $remove_multicollinearity 45 #if $advanced_settings.remove_multicollinearity
46 --remove_multicollinearity 46 --remove_multicollinearity
47 #end if 47 #end if
48 #if $polynomial_features 48 #if $advanced_settings.polynomial_features
49 --polynomial_features 49 --polynomial_features
50 #end if 50 #end if
51 #if $fix_imbalance 51 #if $advanced_settings.fix_imbalance
52 --fix_imbalance 52 --fix_imbalance
53 #end if 53 #end if
54 #if $probability_threshold 54 #if $advanced_settings.probability_threshold
55 --probability_threshold '$probability_threshold' 55 --probability_threshold '$advanced_settings.probability_threshold'
56 #end if 56 #end if
57 #end if 57 #end if
58 #if $has_test_file == "yes" 58 #if $test_data_choice.has_test_file == "yes"
59 --test_file '$test_file' 59 --test_file '$test_data_choice.test_file'
60 #end if 60 #end if
61 --model_type '$model_type' 61 --model_type '$model_selection.model_type'
62 #if $best_model_metric 62 #if $model_selection.best_model_metric
63 --best_model_metric '$best_model_metric' 63 --best_model_metric '$model_selection.best_model_metric'
64 #end if 64 #end if
65 ]]> 65 ]]>
66 </command> 66 </command>
67 <inputs> 67 <inputs>
68 <param name="input_file" type="data" format="csv,tabular" label="Tabular Input Dataset" /> 68 <param name="input_file" type="data" format="csv,tabular" label="Tabular Input Dataset" />