Mercurial > repos > goeckslab > tabular_learner
diff tabular_learner.xml @ 14:edd515746388 draft default tip
planemo upload for repository https://github.com/goeckslab/gleam commit b7022441aaa1313a9104562ca621c465a203c245
| author | goeckslab |
|---|---|
| date | Mon, 29 Dec 2025 20:34:38 +0000 |
| parents | 49f73a3c12f3 |
| children |
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--- a/tabular_learner.xml Sat Dec 06 14:20:23 2025 +0000 +++ b/tabular_learner.xml Mon Dec 29 20:34:38 2025 +0000 @@ -7,60 +7,60 @@ <command> <![CDATA[ python $__tool_directory__/pycaret_train.py --input_file '$input_file' --target_col '$target_feature' --output_dir '.' --random_seed '$random_seed' --n-jobs \${GALAXY_SLOTS:-1} - #if $model_type == "classification" - #if $classification_models - --models '$classification_models' + #if $model_selection.model_type == "classification" + #if $model_selection.classification_models + --models '$model_selection.classification_models' #end if #end if - #if $model_type == "regression" - #if $regression_models - --models '$regression_models' + #if $model_selection.model_type == "regression" + #if $model_selection.regression_models + --models '$model_selection.regression_models' #end if #end if #if $tune_model --tune_model #end if - #if $customize_defaults == "true" - #if $train_size - --train_size '$train_size' + #if $advanced_settings.customize_defaults == "true" + #if $advanced_settings.train_size + --train_size '$advanced_settings.train_size' #end if - #if $normalize + #if $advanced_settings.normalize --normalize #end if - #if $feature_selection + #if $advanced_settings.feature_selection --feature_selection #end if - #if $enable_cross_validation == "true" + #if $advanced_settings.cross_validation.enable_cross_validation == "true" --cross_validation - #if $cross_validation_folds - --cross_validation_folds '$cross_validation_folds' + #if $advanced_settings.cross_validation.cross_validation_folds + --cross_validation_folds '$advanced_settings.cross_validation.cross_validation_folds' #end if #end if - #if $enable_cross_validation == "false" + #if $advanced_settings.cross_validation.enable_cross_validation == "false" --no_cross_validation #end if - #if $remove_outliers + #if $advanced_settings.remove_outliers --remove_outliers #end if - #if $remove_multicollinearity + #if $advanced_settings.remove_multicollinearity --remove_multicollinearity #end if - #if $polynomial_features + #if $advanced_settings.polynomial_features --polynomial_features #end if - #if $fix_imbalance + #if $advanced_settings.fix_imbalance --fix_imbalance #end if - #if $probability_threshold - --probability_threshold '$probability_threshold' + #if $advanced_settings.probability_threshold + --probability_threshold '$advanced_settings.probability_threshold' #end if #end if - #if $has_test_file == "yes" - --test_file '$test_file' + #if $test_data_choice.has_test_file == "yes" + --test_file '$test_data_choice.test_file' #end if - --model_type '$model_type' - #if $best_model_metric - --best_model_metric '$best_model_metric' + --model_type '$model_selection.model_type' + #if $model_selection.best_model_metric + --best_model_metric '$model_selection.best_model_metric' #end if ]]> </command>
