# HG changeset patch
# User goeckslab
# Date 1767040478 0
# Node ID edd515746388fdb472fb0a899fe1c8c36b39a73b
# Parent  bf0df21a1ea39bd405159ddf804f7f96a1d9db17
planemo upload for repository https://github.com/goeckslab/gleam commit b7022441aaa1313a9104562ca621c465a203c245

diff -r bf0df21a1ea3 -r edd515746388 tabular_learner.xml
--- a/tabular_learner.xml	Sat Dec 06 14:20:23 2025 +0000
+++ b/tabular_learner.xml	Mon Dec 29 20:34:38 2025 +0000
@@ -7,60 +7,60 @@
     <command>
         <![CDATA[
         python $__tool_directory__/pycaret_train.py --input_file '$input_file' --target_col '$target_feature' --output_dir '.' --random_seed '$random_seed' --n-jobs \${GALAXY_SLOTS:-1}
-        #if $model_type == "classification"
-            #if $classification_models
-                --models '$classification_models'
+        #if $model_selection.model_type == "classification"
+            #if $model_selection.classification_models
+                --models '$model_selection.classification_models'
             #end if
         #end if
-        #if $model_type == "regression"
-            #if $regression_models
-                --models '$regression_models'
+        #if $model_selection.model_type == "regression"
+            #if $model_selection.regression_models
+                --models '$model_selection.regression_models'
             #end if
         #end if
         #if $tune_model
             --tune_model
         #end if
-        #if $customize_defaults == "true"
-                #if $train_size
-                --train_size '$train_size'
+        #if $advanced_settings.customize_defaults == "true"
+                #if $advanced_settings.train_size
+                --train_size '$advanced_settings.train_size'
                 #end if
-                #if $normalize
+                #if $advanced_settings.normalize
                 --normalize
                 #end if
-                #if $feature_selection
+                #if $advanced_settings.feature_selection
                 --feature_selection
                 #end if
-                #if $enable_cross_validation == "true"
+                #if $advanced_settings.cross_validation.enable_cross_validation == "true"
                     --cross_validation
-                    #if $cross_validation_folds
-                        --cross_validation_folds '$cross_validation_folds'
+                    #if $advanced_settings.cross_validation.cross_validation_folds
+                        --cross_validation_folds '$advanced_settings.cross_validation.cross_validation_folds'
                     #end if
                 #end if
-                #if $enable_cross_validation == "false"
+                #if $advanced_settings.cross_validation.enable_cross_validation == "false"
                     --no_cross_validation
                 #end if
-                #if $remove_outliers
+                #if $advanced_settings.remove_outliers
                 --remove_outliers
                 #end if
-                #if $remove_multicollinearity
+                #if $advanced_settings.remove_multicollinearity
                 --remove_multicollinearity
                 #end if
-                #if $polynomial_features
+                #if $advanced_settings.polynomial_features
                 --polynomial_features
                 #end if
-                #if $fix_imbalance
+                #if $advanced_settings.fix_imbalance
                 --fix_imbalance
                 #end if
-                #if $probability_threshold
-                --probability_threshold '$probability_threshold'
+                #if $advanced_settings.probability_threshold
+                --probability_threshold '$advanced_settings.probability_threshold'
                 #end if
         #end if
-        #if $has_test_file == "yes"
-            --test_file '$test_file'
+        #if $test_data_choice.has_test_file == "yes"
+            --test_file '$test_data_choice.test_file'
         #end if
-        --model_type '$model_type'
-        #if $best_model_metric
-            --best_model_metric '$best_model_metric'
+        --model_type '$model_selection.model_type'
+        #if $model_selection.best_model_metric
+            --best_model_metric '$model_selection.best_model_metric'
         #end if
         ]]>
     </command>