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planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
author goeckslab
date Tue, 20 Sep 2022 17:35:01 +0000
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cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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1 <tool id="example" name="example" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT">
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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2 <description>serving as an example</description>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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3 <xrefs>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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4 <xref type="bio.tools"></xref>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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5 </xrefs>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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6 <macros>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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7 <token name="@TOOL_VERSION@">0.1.0</token>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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8 <token name="@VERSION_SUFFIX@">0</token>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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9 </macros>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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10 <edam_topics>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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11 <edam_topic>topic_4019</edam_topic>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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12 </edam_topics>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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13 <edam_operations>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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14 <edam_operation>operation_3429</edam_operation>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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15 </edam_operations>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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16 <requirements>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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17 <requirement type="package" version="5.0.018">bash</requirement>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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18 </requirements>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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19 <command detect_errors="aggressive"><![CDATA[
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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20 echo '$in' > '$out'
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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21 ]]></command>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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22 <inputs>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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23 <param name="in" type="text" value="" label="A text onput parameter" help="Could need some help">
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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24 <sanitizer invalid_char="">
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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25 <valid initial="string.letters,string.digits">
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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26 <add value="_" />
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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27 </valid>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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28 </sanitizer>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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29 </param>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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30 </inputs>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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31 <outputs>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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32 <data format="txt" name="out" />
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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33 </outputs>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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34 <tests>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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35 <test>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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36 <param name="in" value="test" />
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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37 <output name="out">
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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38 <assert_contents>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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39 <has_text text="test" />
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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40 </assert_contents>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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41 </output>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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42 </test>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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43 </tests>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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44 <help><![CDATA[
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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45
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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46 .. class:: infomark
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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47
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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48 **What it does**
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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49
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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50 Serves as an example
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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51 ]]></help>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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52 <citations>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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53 <citation type="doi">10.1093/nar/gky379</citation>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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54 </citations>
cdf628cb43db planemo upload for repository https://github.com/bernt-matthias/galaxy-tool-repository-template/tree/master/tools/example/ commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
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55 </tool>