Mercurial > repos > goeckslab > vitessce_spatial

comparison vitessce_spatial.py @ 7:cab38f254824 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/vitessce commit 52576a03742abfab8a623c06e22624f1d8423e3d
author goeckslab
date Mon, 21 Jul 2025 16:47:46 +0000
parents 97be83fc3677
children
comparison
equal deleted inserted replaced
6:70c8be4d59e9 7:cab38f254824
81 dataset=dataset, 81 dataset=dataset,
82 w=lc_dims[0], 82 w=lc_dims[0],
83 h=lc_dims[1]) 83 h=lc_dims[1])
84 84
85 # Build the prefix that Vitessce should use 85 # Build the prefix that Vitessce should use
86 display_prefix = (f"{galaxy_url}/api/datasets/{dataset_id}/display?filename=") 86 display_prefix = f"{galaxy_url}/api/datasets/{dataset_id}/extra_files/raw"
87 87
88 # if no anndata file, export the config with these minimal components 88 # if no anndata file, export the config with these minimal components
89 if not anndata: 89 if not anndata:
90 vc.layout(lc | spatial) 90 vc.layout(lc | spatial)
91 config_dict = vc.export( 91 config_dict = vc.export(