Mercurial > repos > grau > dimont_motif_discovery

comparison DimontWeb.xml @ 1:eb36f7f72fb1 draft

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author grau
date Wed, 20 Nov 2013 04:33:20 -0500
parents b7d6db3ba6bc
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142 The parameter "Delete BSs from profile" defines if BSs of already discovered motifs should be deleted, i.e., "blanked out", from the sequence before searching for futher motifs. 142 The parameter "Delete BSs from profile" defines if BSs of already discovered motifs should be deleted, i.e., "blanked out", from the sequence before searching for futher motifs.
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144 You can also install this web-application within your local Galaxy server. Instructions can be found at the Dimont_ page of Jstacs. 144 You can also install this web-application within your local Galaxy server. Instructions can be found at the Dimont_ page of Jstacs.
145 There you can also download a command line version of Dimont. 145 There you can also download a command line version of Dimont.
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147 If you use Dimont, please cite
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149 \J. Grau, S. Posch, I. Grosse, and J. Keilwagen. A general approach for discriminative de-novo motif discovery from high-throughput data. *Nucleic Acids Research*, 41(21):e197, 2013.
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147 If you experience problems using Dimont, please contact_ us. 151 If you experience problems using Dimont, please contact_ us.
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149 .. _example: http://www.jstacs.de/downloads/dimont-example.fa 153 .. _example: http://www.jstacs.de/downloads/dimont-example.fa
150 .. _script: http://www.jstacs.de/index.php/Dimont#Data_preparation 154 .. _script: http://www.jstacs.de/index.php/Dimont#Data_preparation
151 .. _Dimont: http://jstacs.de/index.php/Dimont 155 .. _Dimont: http://jstacs.de/index.php/Dimont