Mercurial > repos > grau > dimont_motif_discovery

diff test-data/minigenome.fa @ 0:b7d6db3ba6bc draft

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author grau
date Wed, 13 Nov 2013 04:25:23 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/minigenome.fa	Wed Nov 13 04:25:23 2013 -0500
@@ -0,0 +1,44 @@
+> chr1
+Cgacaatgcacgacagaggaagcagaacagatatttagattgcctctcat
+tttctctcccatattatagggagaaatatgatcgcgtatgcgagagtagt
+gccaacatattgtgctctttgattttttggcaacccaaaatggtggcgga
+tgaaCGAGATGATAATATATTCAAGTTGCCGCTAATCAGAAATAAATTCA
+TTGCAACGTTAAATACAGCACAATATATGATCGCGTATGCGAGAGTAGTG
+CCAACATATTGTGCTAATGAGTGCCTCTCGTTCTCTGTCTTATATTACCG
+CAAACCCAAAAAgacaatacacgacagagagagagagcagcggagatatt
+tagattgcctattaaatatgatcgcgtatgcgagagtagtgccaacatat
+tgtgctctCTATATAATGACTGCCTCTCATTCTGTCTTATTTTACCGCAA
+ACCCAAatcgacaatgcacgacagaggaagcagaacagatatttagattg
+cctctcattttctctcccatattatagggagaaatatgatcgcgtatgcg
+agagtagtgccaacatattgtgctctttgattttttggcaacccaaaatg
+gtggcggatgaaCGAGATGATAATATATTCAAGTTGCCGCTAATCAGAAA
+TAAATTCATTGCAACGTTAAATACAGCACAATATATGATCGCGTATGCGA
+GAGTAGTGCCAACATATTGTGCTAATGAGTGCCTCTCGTTCTCTGTCTTA
+TATTACCGCAAACCCAAAAAgacaatacacgacagagagagagagcagcg
+gagatatttagattgcctattaaatatgatcgcgtatgcgagagtagtgc
+caacatattgtgctctCTATATAATGACTGCCTCTCATTCTGTCTTATTT
+TACCGCAAACCCAAatcgacaatgcacgacagaggaagcagaacagatat
+ttagattgcctctcattttctctcccatattatagggagaaatatgatcg
+cgtatgcgagagtagtgccaacatattgtgctctttgattttttggcaac
+ccaaaatggtggcggatgaaCGAGATGATAATATATTCAAGTTGCCGCTA
+ATCAGAAATAAATTCATTGCAACGTTAAATACAGCACAATATATGATCGC
+GTATGCGAGAGTAGTGCCAACATATTGTGCTAATGAGTGCCTCTCGTTCT
+CTGTCTTATATTACCGCAAACCCAAAAAgacaatacacgacagagagaga
+gagcagcggagatatttagattgcctattaaatatgatcgcgtatgcgag
+> chr2
+agatatttagattgcctctcattttctctcccatattatagggagaaata
+tgatcgcgtatgcgagagtagtgccaacatattgtgctctttgatttttt
+ggcaacccaaaatggtggcggatgaaCGAGATGATAATATATTCAAGTTG
+CCGCTAATCAGAAATAAATTCATTGCAACGTTAAATACAGCACAATATAT
+GATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCTAATGAGTGCCTCT
+CGTTCTCTGTCTTATATTACCGCAAACCCAAAAAgacaatacacgacaga
+gagagagagcagcggagatatttagattgcctattaaatatgatcgcgta
+tgcgagagtagtgccaacatattgtgctctCTATATAATGACTGCCTCTC
+ATTCTGTCTTATTTTACCGCAAACCCAAatcgacaatgcacgacagagga
+agcagaacagatatttagattgcctctcattttctctcccatattatagg
+gagaaatatgatcgcgtatgcgagagtagtgccaacatattgtgctcttt
+gattttttggcaacccaaaatggtggcggatgaaCGAGATGATAATATAT
+TCAAGTTGCCGCTAATCAGAAATAAATTCATTGCAACGTTAAATACAGCA
+CAATATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCTAATGA
+GTGCCTCTCGTTCTCTGTCTTATATTACCGCAAACCCAAAAAgacaatac
+acgacagagagagagagcagcggagatatttagattgcctattaaatatg
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