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comparison macros.xml @ 2:02025c366fca draft

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author greg
date Thu, 01 Nov 2018 09:11:57 -0400
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1:a2f0931898be 2:02025c366fca
1 <macros>
2 <token name="@WRAPPER_VERSION@">1.9</token>
3 <xml name="citation1">
4 <citation type="doi">10.1093/bioinformatics/btp352</citation>
5 </xml>
6 <token name="@PREPARE_ENV@">
7 <![CDATA[
8 export BCFTOOLS_PLUGINS=\$(dirname `which bcftools`)/../libexec/bcftools;
9 ]]>
10 </token>
11 <token name="@THREADS@">
12 --threads \${GALAXY_SLOTS:-4}
13 </token>
14 <xml name="vcf_output">
15 <data name="output" format="vcf">
16 <change_format>
17 <when input="output_type" value="b" format="bcf" />
18 <when input="output_type" value="u" format="bcf" />
19 <when input="output_type" value="z" format="vcf_bgzip" />
20 <when input="output_type" value="v" format="vcf" />
21 </change_format>
22 </data>
23 </xml>
24 </macros>
25