Mercurial > repos > greg > affy2vcf
diff macros.xml @ 2:02025c366fca draft
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author | greg |
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date | Thu, 01 Nov 2018 09:11:57 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Nov 01 09:11:57 2018 -0400 @@ -0,0 +1,25 @@ +<macros> + <token name="@WRAPPER_VERSION@">1.9</token> + <xml name="citation1"> + <citation type="doi">10.1093/bioinformatics/btp352</citation> + </xml> + <token name="@PREPARE_ENV@"> +<![CDATA[ +export BCFTOOLS_PLUGINS=\$(dirname `which bcftools`)/../libexec/bcftools; +]]> + </token> + <token name="@THREADS@"> + --threads \${GALAXY_SLOTS:-4} + </token> + <xml name="vcf_output"> + <data name="output" format="vcf"> + <change_format> + <when input="output_type" value="b" format="bcf" /> + <when input="output_type" value="u" format="bcf" /> + <when input="output_type" value="z" format="vcf_bgzip" /> + <when input="output_type" value="v" format="vcf" /> + </change_format> + </data> + </xml> +</macros> +