Mercurial > repos > greg > affy2vcf
diff affy2vcf.xml @ 3:6274184a8b84 draft default tip
Uploaded
author | greg |
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date | Fri, 30 Nov 2018 08:23:05 -0500 |
parents | 02025c366fca |
children |
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--- a/affy2vcf.xml Thu Nov 01 09:11:57 2018 -0400 +++ b/affy2vcf.xml Fri Nov 30 08:23:05 2018 -0500 @@ -14,7 +14,7 @@ #if str($reference_genome_source_cond.reference_genome_source) == "history": --fasta-ref '$reference_genome_source_cond.history_item' #else: - --fasta-ref '$reference_genome_source_cond.locally_cached_item' + --fasta-ref '$reference_genome_source_cond.locally_cached_item.fields.path' #end if --annot '$annot' --snp-posteriors '$snp_posteriors' @@ -50,9 +50,9 @@ <when value="cached"> <param name="locally_cached_item" type="select" format="fasta" label="Fasta reference sequence"> <options from_data_table="all_fasta"> - <column name="name" index="1"/> - <column name="value" index="2"/> - <column name="path" index="2"/> + <column name="name" index="2"/> + <column name="value" index="0"/> + <column name="path" index="3"/> <filter type="sort_by" column="1"/> <validator type="no_options" message="No cached Fasta genome references are available for the build associated with the selected probeset annotation file." /> </options>