Mercurial > repos > greg > call_insertions
diff test-data/dnadiff_report.txt @ 0:5626dc2d0ef2 draft default tip
Uploaded
| author | greg |
|---|---|
| date | Tue, 07 Feb 2023 21:43:42 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dnadiff_report.txt Tue Feb 07 21:43:42 2023 +0000 @@ -0,0 +1,87 @@ +/home/galaxies/lrn/galaxy/database/files/000/dataset_17.dat /home/galaxies/lrn/galaxy/database/files/002/dataset_2176.dat +NUCMER + + [REF] [QRY] +[Sequences] +TotalSeqs 34305 6 +AlignedSeqs 697(2.0318%) 3(50.0000%) +UnalignedSeqs 33608(97.9682%) 3(50.0000%) + +[Bases] +TotalBases 2077959494 11421968 +AlignedBases 3025775(0.1456%) 228614(2.0015%) +UnalignedBases 2074933719(99.8544%) 11193354(97.9985%) + +[Alignments] +1-to-1 78 78 +TotalLength 187128 187163 +AvgLength 2399.0769 2399.5256 +AvgIdentity 94.7915 94.7915 + +M-to-M 3246 3246 +TotalLength 4521754 4532531 +AvgLength 1393.0234 1396.3435 +AvgIdentity 90.0308 90.0308 + +[Feature Estimates] +Breakpoints 6288 6480 +Relocations 10 2 +Translocations 1 67 +Inversions 2 0 + +Insertions 5794 200 +InsertionSum 41691366 11221715 +InsertionAvg 7195.6103 56108.5750 + +TandemIns 0 0 +TandemInsSum 0 0 +TandemInsAvg 0.0000 0.0000 + +[SNPs] +TotalSNPs 6547 6547 +TG 351(5.3612%) 323(4.9336%) +TC 967(14.7701%) 933(14.2508%) +TA 453(6.9192%) 435(6.6443%) +GC 232(3.5436%) 202(3.0854%) +GA 989(15.1062%) 986(15.0603%) +GT 323(4.9336%) 351(5.3612%) +AG 986(15.0603%) 989(15.1062%) +AC 352(5.3765%) 324(4.9488%) +AT 435(6.6443%) 453(6.9192%) +CG 202(3.0854%) 232(3.5436%) +CA 324(4.9488%) 352(5.3765%) +CT 933(14.2508%) 967(14.7701%) + +TotalGSNPs 366 366 +TC 75(20.4918%) 59(16.1202%) +TA 15(4.0984%) 15(4.0984%) +TG 12(3.2787%) 13(3.5519%) +AC 13(3.5519%) 12(3.2787%) +AG 71(19.3989%) 73(19.9454%) +AT 15(4.0984%) 15(4.0984%) +CT 59(16.1202%) 75(20.4918%) +CG 4(1.0929%) 4(1.0929%) +CA 12(3.2787%) 13(3.5519%) +GT 13(3.5519%) 12(3.2787%) +GC 4(1.0929%) 4(1.0929%) +GA 73(19.9454%) 71(19.3989%) + +TotalIndels 874 874 +T. 133(15.2174%) 156(17.8490%) +G. 60(6.8650%) 89(10.1831%) +A. 119(13.6156%) 138(15.7895%) +C. 80(9.1533%) 99(11.3272%) +.A 138(15.7895%) 119(13.6156%) +.C 99(11.3272%) 80(9.1533%) +.G 89(10.1831%) 60(6.8650%) +.T 156(17.8490%) 133(15.2174%) + +TotalGIndels 34 34 +T. 1(2.9412%) 8(23.5294%) +A. 0(0.0000%) 15(44.1176%) +C. 0(0.0000%) 7(20.5882%) +G. 0(0.0000%) 3(8.8235%) +.G 3(8.8235%) 0(0.0000%) +.A 15(44.1176%) 0(0.0000%) +.C 7(20.5882%) 0(0.0000%) +.T 8(23.5294%) 1(2.9412%)