Mercurial > repos > greg > cfsan_snp_pipeline_snp_matrix
comparison macros.xml @ 0:6b0a13deae92 draft
Uploaded
| author | greg |
|---|---|
| date | Fri, 13 Oct 2023 20:26:32 +0000 |
| parents | |
| children | f3485a9e51a3 |
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| -1:000000000000 | 0:6b0a13deae92 |
|---|---|
| 1 <macros> | |
| 2 <token name="@TOOL_VERSION@">2.2.1</token> | |
| 3 <token name="@VERSION_SUFFIX@">0</token> | |
| 4 <token name="@PROFILE@">21.01</token> | |
| 5 <xml name="requirements"> | |
| 6 <requirements> | |
| 7 <requirement type="package" version="@TOOL_VERSION@">snp-pipeline</requirement> | |
| 8 <requirement type="package" version="3.6.8">python</requirement> | |
| 9 </requirements> | |
| 10 </xml> | |
| 11 <xml name="input_type_cond"> | |
| 12 <conditional name="input_type_cond"> | |
| 13 <param name="input_type" type="select" label="Choose the category for the files to be analyzed"> | |
| 14 <option value="single" selected="true">Single files</option> | |
| 15 <option value="collection">Collection of files</option> | |
| 16 </param> | |
| 17 <when value="single"> | |
| 18 <param name="input_fasta" type="data" format="fasta" label="FASTA file"/> | |
| 19 </when> | |
| 20 <when value="collection"> | |
| 21 <param name="input_fasta_collection" type="data_collection" format="fasta" collection_type="list" label="Collection of fasta files"/> | |
| 22 </when> | |
| 23 </conditional> | |
| 24 </xml> | |
| 25 <xml name="reference_cond"> | |
| 26 <conditional name="reference_cond"> | |
| 27 <param name="reference_source" type="select" label="Choose the source for the reference genome"> | |
| 28 <option value="cached" selected="true">locally cached</option> | |
| 29 <option value="history">from history</option> | |
| 30 </param> | |
| 31 <when value="cached"> | |
| 32 <param name="reference" type="select" label="Select reference"> | |
| 33 <options from_data_table="all_fasta"> | |
| 34 <filter type="sort_by" column="2"/> | |
| 35 <validator type="no_options" message="No assemblies are available for the selected input dataset"/> | |
| 36 </options> | |
| 37 </param> | |
| 38 </when> | |
| 39 <when value="history"> | |
| 40 <param name="reference" type="data" format="fasta" label="FASTA Reference from your history"/> | |
| 41 </when> | |
| 42 </conditional> | |
| 43 </xml> | |
| 44 <xml name="citations"> | |
| 45 <citations> | |
| 46 <citation type="doi">10.7717/peerj-cs.20</citation> | |
| 47 </citations> | |
| 48 </xml> | |
| 49 </macros> | |
| 50 |