Mercurial > repos > greg > data_manager_vsnp_genbank

comparison data_manager/vsnp_genbank_fetcher.xml @ 2:df67ba6db5de draft default tip

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author greg
date Wed, 06 May 2020 10:58:29 -0400
parents f1a7a3faaf3d
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1:f136bf6d2f4c 2:df67ba6db5de
21 <outputs> 21 <outputs>
22 <data name="out_file" format="data_manager_json" /> 22 <data name="out_file" format="data_manager_json" />
23 </outputs> 23 </outputs>
24 <tests> 24 <tests>
25 <test> 25 <test>
26 <param name="all_fasta_source" value="AF2122"/>
27 <param name="url" value="https://github.com/USDA-VS/vSNP_reference_options/raw/master/Mycobacterium_AF2122/NC_002945v4.gbk"/>
28 <output name="out_file" value="vsnp_genbank.json" compare="contains"/>
26 </test> 29 </test>
27 </tests> 30 </tests>
28 <help><![CDATA[ 31 <help><![CDATA[
29 This tool fetches a vSNP Genbank file associated with each supported genome reference to populate the vsnp_genbank data table. The dbkey and name fields 32 This tool fetches a vSNP Genbank file associated with each supported genome reference to populate the vsnp_genbank data table. The dbkey and name fields
30 in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary. These public vSNP Genbank files are available in GitHub 33 in the vsnp data table are inherited from the *all_fasta* data table, so no user entry is necessary. These public vSNP Genbank files are available in GitHub