Mercurial > repos > greg > data_manager_vsnp_genbank

diff data_manager_conf.xml @ 0:f1a7a3faaf3d draft

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author greg
date Mon, 10 Feb 2020 09:36:20 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Mon Feb 10 09:36:20 2020 -0500
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager/vsnp_genbank_fetcher.xml" id="vsnp_genbank_fetcher">
+        <data_table name="vsnp_genbank">
+            <output>
+                <column name="value" />
+                <column name="name" />
+                <column name="path" output_ref="out_file">
+                    <move type="file" relativize_symlinks="True">
+                        <source>${path}</source>
+			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">vsnp/${value}/genbank/${name}</target>
+                    </move>
+		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/vsnp/${value}/genbank/${name}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+                <column name="description" />
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>
+