|
5
|
1 #This file lists the locations and dbkeys of all the fasta files
|
|
|
2 #under the "genome" directory (a directory that contains a directory
|
|
|
3 #for each build). The script extract_fasta.py will generate the file
|
|
|
4 #all_fasta.loc. This file has the format (white space characters are
|
|
|
5 #TAB characters):
|
|
|
6 #
|
|
|
7 #<unique_build_id> <dbkey> <display_name> <file_path>
|
|
|
8 #
|
|
|
9 #So, all_fasta.loc could look something like this:
|
|
|
10 #
|
|
|
11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
|
|
|
12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
|
|
|
13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
|
|
|
14 #
|
|
|
15 #Your all_fasta.loc file should contain an entry for each individual
|
|
|
16 #fasta file. So there will be multiple fasta files for each build,
|
|
|
17 #such as with hg19 above.
|
|
|
18 #
|
