Mercurial > repos > greg > draw_features

comparison draw_features.xml @ 5:c318e520dca1 draft

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Uploaded
author greg
date Thu, 02 Mar 2023 16:11:22 +0000
parents 3ba596014675
children d5a5d145cfce
comparison
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4:3ba596014675 5:c318e520dca1
41 <outputs> 41 <outputs>
42 <data name="process_log" format="txt" label="${tool.name} on ${on_string} (process log)"> 42 <data name="process_log" format="txt" label="${tool.name} on ${on_string} (process log)">
43 <filter>output_process_log == 'yes'</filter> 43 <filter>output_process_log == 'yes'</filter>
44 </data> 44 </data>
45 <collection name="features_bed" type="list" format="bed" label="${tool.name} on ${on_string} (best bed)"> 45 <collection name="features_bed" type="list" format="bed" label="${tool.name} on ${on_string} (best bed)">
46 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;bed)" directory="feature_hits_dir"/> 46 <discover_datasets pattern="__name__" directory="feature_hits_dir" format="bed"/>
47 </collection> 47 </collection>
48 <collection name="features_png" type="list" format="png" label="${tool.name} on ${on_string} (png)"> 48 <collection name="features_png" type="list" format="png" label="${tool.name} on ${on_string} (png)">
49 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;png)" directory="output_dir"/> 49 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.(?P&lt;ext&gt;png)" directory="output_dir"/>
50 </collection> 50 </collection>
51 </outputs> 51 </outputs>
56 <collection type="list"> 56 <collection type="list">
57 <element name="amr_cds.bed" value="amr_cds.bed"/> 57 <element name="amr_cds.bed" value="amr_cds.bed"/>
58 </collection> 58 </collection>
59 </param> 59 </param>
60 <output_collection name="features_bed" type="list" count="1"> 60 <output_collection name="features_bed" type="list" count="1">
61 <element name="amr_cds" ftype="bed"> 61 <element name="amr_cds.bed" ftype="bed">
62 <assert_contents> 62 <assert_contents>
63 <has_size value="129" delta="10"/> 63 <has_size value="129" delta="10"/>
64 </assert_contents> 64 </assert_contents>
65 </element> 65 </element>
66 </output_collection> 66 </output_collection>