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comparison insect_phenology_model.xml @ 14:4aadc28100b0 draft

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author greg
date Mon, 05 Mar 2018 08:27:17 -0500
parents 8f7d918586bc
children 6f31ade9a0f4
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13:8f7d918586bc 14:4aadc28100b0
2 <description>expressing stage-specific phenology and population dynamics</description> 2 <description>expressing stage-specific phenology and population dynamics</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.4.4">r-optparse</requirement> 4 <requirement type="package" version="1.4.4">r-optparse</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 #set life_stages_nymph = "None" 7 #set life_stage_nymph = "None"
8 #set life_stages_adult = "None" 8 #set life_stages_adult = "None"
9 #set stages = list() 9 #set stages = list()
10 #set plot_adult_life_stage = $plot_adult_life_stage_cond.plot_adult_life_stage 10 #set plot_adult_life_stage = $plot_adult_life_stage_cond.plot_adult_life_stage
11 #set plot_nymph_life_stage = $plot_nymph_life_stage_cond.plot_nymph_life_stage 11 #set plot_nymph_life_stage = $plot_nymph_life_stage_cond.plot_nymph_life_stage
12 #if str($plot_egg_life_stage) == "yes" and str($plot_nymph_life_stage) == "yes" and str($plot_adult_life_stage) == "yes": 12 #if str($plot_egg_life_stage) == "yes" and str($plot_nymph_life_stage) == "yes" and str($plot_adult_life_stage) == "yes":
37 --insects_per_replication $insects_per_replication 37 --insects_per_replication $insects_per_replication
38 --life_stages '$stages' 38 --life_stages '$stages'
39 #if str($life_stages_adult) != "None": 39 #if str($life_stages_adult) != "None":
40 --life_stages_adult $life_stages_adult 40 --life_stages_adult $life_stages_adult
41 #end if 41 #end if
42 #if str($life_stage_nymph) != "no": 42 #if str($life_stage_nymph) != "None":
43 --life_stage_nymph $life_stage_nymph 43 --life_stage_nymph $life_stage_nymph
44 #end if 44 #end if
45 --location '$location' 45 --location '$location'
46 --max_clutch_size $max_clutch_size 46 --max_clutch_size $max_clutch_size
47 --min_clutch_size $min_clutch_size 47 --min_clutch_size $min_clutch_size
152 * **Adjustment of maximum clutch size** - adjustment of maximum clutch size 152 * **Adjustment of maximum clutch size** - adjustment of maximum clutch size
153 * **Adjustment of degree-days accumulation (egg->young nymph)** - adjustment of degree-days accumulation (egg->young nymph). 153 * **Adjustment of degree-days accumulation (egg->young nymph)** - adjustment of degree-days accumulation (egg->young nymph).
154 * **Adjustment of degree-days accumulation (young nymph->old nymph)** - adjustment of degree-days accumulation (young nymph->old nymph). 154 * **Adjustment of degree-days accumulation (young nymph->old nymph)** - adjustment of degree-days accumulation (young nymph->old nymph).
155 * **Adjustment of degree-days accumulation (old nymph->adult)** - adjustment of degree-days accumulation (old nymph->adult). 155 * **Adjustment of degree-days accumulation (old nymph->adult)** - adjustment of degree-days accumulation (old nymph->adult).
156 * **Plot generations separately** - select "Yes" to plot P, F1 and F2 as separate lines or "no" to pool across generations, resulting in a total for the selected life states. 156 * **Plot generations separately** - select "Yes" to plot P, F1 and F2 as separate lines or "no" to pool across generations, resulting in a total for the selected life states.
157 * **Select life stages for plotting** - select any combinaton of Egg, Nymph, Adult or "All" for plotting. 157 * **Plot egg life stage** - select "Yes" to plot the egg life stage. If all life stages (egg, nymph and adult) are selected for plotting, one output for the total will be produced.
158 * **Plot nymph life stage** - select "Yes" to plot the nymph life stage. If all life stages (egg, nymph and adult) are selected for plotting, one output for the total will be produced.
159
160 * **Select nymph life stage** - select the nymph life stage for plotting.
161
162 * **Plot adult life stage** - select "Yes" to plot the adult life stage. If all life stages (egg, nymph and adult) are selected for plotting, one output for the total will be produced.
163
164 * **Select adult life stage** - select the adult life stage for plotting.
165
158 * **Plot standard error** - add standard error lines to plot. 166 * **Plot standard error** - add standard error lines to plot.
159
160 </help> 167 </help>
161 <citations> 168 <citations>
162 <citation type="doi">10.3389/fphys.2016.00165</citation> 169 <citation type="doi">10.3389/fphys.2016.00165</citation>
163 <citation type="doi">10.1175/JTECH-D-11-00103.1</citation> 170 <citation type="doi">10.1175/JTECH-D-11-00103.1</citation>
164 <citation type="doi">10.7289/V5D21VHZ</citation> 171 <citation type="doi">10.7289/V5D21VHZ</citation>