Mercurial > repos > greg > insect_phenology_model

comparison insect_phenology_model.xml @ 26:93209c167a61 draft

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author greg
date Fri, 09 Mar 2018 13:41:31 -0500
parents 58255c06d24b
children afe6d8bac0c0
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25:390d89243074 26:93209c167a61
44 --oviposition $oviposition 44 --oviposition $oviposition
45 --photoperiod $photoperiod 45 --photoperiod $photoperiod
46 --replications $replications 46 --replications $replications
47 --plot_generations_separately $plot_generations_separately 47 --plot_generations_separately $plot_generations_separately
48 --plot_std_error $plot_std_error 48 --plot_std_error $plot_std_error
49 --young_nymph_accumulation $young_nymph_accumulation]]></command> 49 --young_nymph_accumulation $young_nymph_accumulation
50 --output '$output']]></command>
50 <inputs> 51 <inputs>
51 <param name="input" type="data" format="csv" label="Temperature data" /> 52 <param name="input" type="data" format="csv" label="Temperature data" />
52 <param name="location" type="text" value="" optional="false" label="Location" /> 53 <param name="location" type="text" value="" optional="false" label="Location" />
53 <param name="insect" type="select" label="Select insect"> 54 <param name="insect" type="select" label="Select insect">
54 <option value="BMSB" selected="True">Brown Marmorated Stink Bug</option> 55 <option value="BMSB" selected="True">Brown Marmorated Stink Bug</option>
106 <option value="yes" selected="True">Yes</option> 107 <option value="yes" selected="True">Yes</option>
107 <option value="no">No</option> 108 <option value="no">No</option>
108 </param> 109 </param>
109 </inputs> 110 </inputs>
110 <outputs> 111 <outputs>
111 <collection name="output_collection" type="list" label="${tool.name} ${location}, on ${on_string}"> 112 <data name="output" format="csv" label="${tool.name} (analyzed data) on ${on_string}"/>
113 <collection name="output_collection" type="list" label="${tool.name} (plots), on ${on_string}">
112 <discover_datasets pattern="__name__" directory="output_dir" format="pdf" /> 114 <discover_datasets pattern="__name__" directory="output_dir" format="pdf" />
113 </collection> 115 </collection>
114 </outputs> 116 </outputs>
115 <tests> 117 <tests>
116 <test> 118 <test>
119 <param name="replications" value="2" /> 121 <param name="replications" value="2" />
120 <param name="plot_generations_separately" value="no" /> 122 <param name="plot_generations_separately" value="no" />
121 <param name="plot_egg_life_stage" value="no" /> 123 <param name="plot_egg_life_stage" value="no" />
122 <param name="life_stages_nymph" value="Young" /> 124 <param name="life_stages_nymph" value="Young" />
123 <param name="life_stages_adult" value="Pre-vittelogenic" /> 125 <param name="life_stages_adult" value="Pre-vittelogenic" />
126 <output name="output" file="output1.csv" ftype="csv"/>
124 <output_collection name="output_collection" type="list"> 127 <output_collection name="output_collection" type="list">
125 <element name="02_young_nymph_pop.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> 128 <element name="02_young_nymph_pop.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/>
126 <element name="05_pre-vittelogenic_adult_pop.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> 129 <element name="05_pre-vittelogenic_adult_pop.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/>
127 </output_collection> 130 </output_collection>
128 </test> 131 </test>
132 <!--
129 <test> 133 <test>
130 <param name="input" value="state_college.csv" ftype="csv" /> 134 <param name="input" value="state_college.csv" ftype="csv" />
131 <param name="location" value="State College PA" /> 135 <param name="location" value="State College PA" />
132 <param name="replications" value="2" /> 136 <param name="replications" value="2" />
133 <param name="plot_generations_separately" value="no" /> 137 <param name="plot_generations_separately" value="no" />
158 <element name="04_total_nymph_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> 162 <element name="04_total_nymph_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/>
159 <element name="08_total_adult_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> 163 <element name="08_total_adult_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/>
160 <element name="09_total_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/> 164 <element name="09_total_pop_by_generation.pdf" file="pop_by_generation.pdf" ftype="pdf" compare="contains"/>
161 </output_collection> 165 </output_collection>
162 </test> 166 </test>
167 -->
163 </tests> 168 </tests>
164 <help> 169 <help>
165 **What it does** 170 **What it does**
166 171
167 Provides an agent-based stochastic model expressing stage-specific phenology and population dynamics for an insect species across geographic regions. 172 Provides an agent-based stochastic model expressing stage-specific phenology and population dynamics for an insect species across geographic regions.