Mercurial > repos > greg > insect_phenology_model

comparison insect_phenology_model.xml @ 44:c61d3d9d44db draft

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author greg
date Mon, 23 Apr 2018 10:18:59 -0400
parents 64132300c62e
children 99e1c1300fcd
comparison
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43:fd3c00392fce 44:c61d3d9d44db
30 --adult_mortality $adult_mortality 30 --adult_mortality $adult_mortality
31 --adult_accumulation $adult_accumulation 31 --adult_accumulation $adult_accumulation
32 --egg_mortality $egg_mortality 32 --egg_mortality $egg_mortality
33 #if str($merge_ytd_temperature_data_cond.merge_ytd_temperature_data) == "yes": 33 #if str($merge_ytd_temperature_data_cond.merge_ytd_temperature_data) == "yes":
34 --input_ytd '$merge_ytd_temperature_data_cond.input_ytd' 34 --input_ytd '$merge_ytd_temperature_data_cond.input_ytd'
35 --num_days_ytd $input_ytd.metadata.data_lines 35 --location '$merge_ytd_temperature_data_cond.location'
36 --num_days_ytd $merge_ytd_temperature_data_cond.input_ytd.metadata.data_lines
36 #end if 37 #end if
37 --input_norm '$input_norm' 38 --input_norm '$input_norm'
38 --insect '$insect' 39 --insect '$insect'
39 --insects_per_replication $insects_per_replication 40 --insects_per_replication $insects_per_replication
40 --life_stages '$life_stages' 41 --life_stages '$life_stages'
42 --life_stages_adult '$plot_adult_life_stage_cond.life_stages_adult' 43 --life_stages_adult '$plot_adult_life_stage_cond.life_stages_adult'
43 #end if 44 #end if
44 #if str($plot_nymph_life_stage) == "yes": 45 #if str($plot_nymph_life_stage) == "yes":
45 --life_stages_nymph '$plot_nymph_life_stage_cond.life_stages_nymph' 46 --life_stages_nymph '$plot_nymph_life_stage_cond.life_stages_nymph'
46 #end if 47 #end if
47 --location '$location'
48 --max_clutch_size $max_clutch_size 48 --max_clutch_size $max_clutch_size
49 --min_clutch_size $min_clutch_size 49 --min_clutch_size $min_clutch_size
50 --nymph_mortality $nymph_mortality 50 --nymph_mortality $nymph_mortality
51 --old_nymph_accumulation $old_nymph_accumulation 51 --old_nymph_accumulation $old_nymph_accumulation
52 --oviposition $oviposition 52 --oviposition $oviposition
71 </param> 71 </param>
72 <when value="yes"> 72 <when value="yes">
73 <param name="input_ytd" type="data" format="csv" label="Year-to-date temperature data"> 73 <param name="input_ytd" type="data" format="csv" label="Year-to-date temperature data">
74 <validator type="expression" message="Year-to-date temperature data must have 6 columns">value is not None and value.metadata.columns==6</validator> 74 <validator type="expression" message="Year-to-date temperature data must have 6 columns">value is not None and value.metadata.columns==6</validator>
75 </param> 75 </param>
76 <param name="location" type="text" value="" optional="true" label="Location" help="Enter the location or leave blank to use the station name from 30 year normals data."/>
76 </when> 77 </when>
77 <when value="no"/> 78 <when value="no"/>
78 </conditional> 79 </conditional>
79 <param name="location" type="text" value="" optional="false" label="Location"/>
80 <param name="insect" type="select" label="Select insect"> 80 <param name="insect" type="select" label="Select insect">
81 <option value="BMSB" selected="True">Brown Marmorated Stink Bug</option> 81 <option value="BMSB" selected="True">Brown Marmorated Stink Bug</option>
82 </param> 82 </param>
83 <param name="replications" type="integer" value="10" min="2" label="Number of replications"/> 83 <param name="replications" type="integer" value="10" min="2" label="Number of replications"/>
84 <param name="insects_per_replication" type="integer" value="1000" min="1" label="Number of insects with which to start each replication"/> 84 <param name="insects_per_replication" type="integer" value="1000" min="1" label="Number of insects with which to start each replication"/>
144 </outputs> 144 </outputs>
145 <tests> 145 <tests>
146 <test> 146 <test>
147 <param name="input_norm" value="30_year_normals.csv" ftype="csv"/> 147 <param name="input_norm" value="30_year_normals.csv" ftype="csv"/>
148 <param name="merge_ytd_temperature_data" value="no"/> 148 <param name="merge_ytd_temperature_data" value="no"/>
149 <param name="location" value="State College PA"/>
150 <param name="replications" value="2"/> 149 <param name="replications" value="2"/>
151 <param name="plot_generations_separately" value="no"/> 150 <param name="plot_generations_separately" value="no"/>
152 <param name="plot_egg_life_stage" value="no"/> 151 <param name="plot_egg_life_stage" value="no"/>
153 <param name="life_stages_nymph" value="Young"/> 152 <param name="life_stages_nymph" value="Young"/>
154 <param name="life_stages_adult" value="Pre-vittelogenic"/> 153 <param name="life_stages_adult" value="Pre-vittelogenic"/>