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comparison insect_phenology_model.xml @ 4:e7b1fc0133bb draft

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author greg
date Mon, 13 Nov 2017 12:57:46 -0500
parents 24fa0d35a8bf
children 1878a03f9c9f
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3:24fa0d35a8bf 4:e7b1fc0133bb
1 <?xml version="."?>
2 <tool id="insect_phenology_model" name="Insect phenology model" version="1.1.0"> 1 <tool id="insect_phenology_model" name="Insect phenology model" version="1.1.0">
3 <description>expressing stage-specific phenology and population dynamics</description> 2 <description>expressing stage-specific phenology and population dynamics</description>
4 <requirements> 3 <requirements>
5 <requirement type="package" version="1.4.4">r-optparse</requirement> 4 <requirement type="package" version="1.4.4">r-optparse</requirement>
6 </requirements> 5 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
8 Rscript '$__tool_directory__/insect_phenology_model.R' 7 Rscript '$__tool_directory__/insect_phenology_model.R'
9 -a $adult_mort 8 -a $adult_mort
10 -b $adult_accum 9 -b $adult_accum
19 -p $oviposition 18 -p $oviposition
20 -q $photoperiod 19 -q $photoperiod
21 -s $replications 20 -s $replications
22 -t $se_plot 21 -t $se_plot
23 -v '$input' 22 -v '$input'
24 -y $young_nymph_accum 23 -y $young_nymph_accum]]></command>
25 ]]></command>
26 <inputs> 24 <inputs>
25 <param name="input" type="data" format="csv" label="Temperature data" />
27 <param name="location" type="text" value="" optional="false" label="Location" /> 26 <param name="location" type="text" value="" optional="false" label="Location" />
28 <param name="input" type="data" format="csv" label="Temperature data" />
29 <param name="replications" type="integer" value="10" min="1" label="Number of replications" /> 27 <param name="replications" type="integer" value="10" min="1" label="Number of replications" />
30 <param name="photoperiod" type="float" value="13.5" min="0" label="Critical photoperiod for diapause induction/termination" /> 28 <param name="photoperiod" type="float" value="13.5" min="0" label="Critical photoperiod for diapause induction/termination" />
31 <param name="egg_mort" type="integer" value="1" min="0" label="Adjustment rate for egg mortality" /> 29 <param name="egg_mort" type="integer" value="1" min="0" label="Adjustment rate for egg mortality" />
32 <param name="nymph_mort" type="integer" value="1" min="0" label="Adjustment rate for nymph mortality" /> 30 <param name="nymph_mort" type="integer" value="1" min="0" label="Adjustment rate for nymph mortality" />
33 <param name="adult_mort" type="integer" value="1" min="0" label="Adjustment rate for adult mortality" /> 31 <param name="adult_mort" type="integer" value="1" min="0" label="Adjustment rate for adult mortality" />