Mercurial > repos > greg > lrn_risk
view test-data/vfdb_output.tsv @ 5:5aa8560d9d91 draft
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author | greg |
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date | Tue, 29 Aug 2023 15:17:07 +0000 |
parents | f98c92618a6c |
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Gene Contig % Identity % Coverage E-Value Annotation Comparison to Publicly Available Genomes BAS3109 contig_1 100.000 100.0 0.0 (BAS3109) thiol-activated cytolysin [ALO (VF0534)] [Bacillus anthracis str. Sterne] Gene BAS3109 has been detected in 97.36% of Bacillus_A anthracis genomes (406 of 417 genomes queried) cya contig_2 99.958 100.0 0.0 (cya) calmodulin sensitive adenylate cyclase edema factor [Anthrax toxin (VF0142)] [Bacillus anthracis str. Sterne] Gene cya has been detected in 50.12% of Bacillus_A anthracis genomes (209 of 417 genomes queried) inhA contig_1 100.000 100.0 0.0 (inhA) immune inhibitor A metalloprotease [InhA (VF0536)] [Bacillus anthracis str. Sterne] Gene inhA has been detected in 99.76% of Bacillus_A anthracis genomes (416 of 417 genomes queried) lef contig_2 100.000 100.0 0.0 (lef) anthrax toxin lethal factor precursor [Anthrax toxin (VF0142)] [Bacillus anthracis str. Sterne] Gene lef has been detected in 50.12% of Bacillus_A anthracis genomes (209 of 417 genomes queried) nheA contig_1 95.780 100.0 0.0 (nheA) non-hemolytic enterotoxin A [Nhe (VF0533)] [Bacillus cereus ATCC 10987] Gene nheA has been detected in 100.0% of Bacillus_A anthracis genomes (417 of 417 genomes queried) nheB contig_1 95.620 100.08 0.0 (nheB) non-hemolytic enterotoxin B [Nhe (VF0533)] [Bacillus cereus ATCC 10987] Gene nheB has been detected in 100.0% of Bacillus_A anthracis genomes (417 of 417 genomes queried) pagA contig_2 100.000 100.0 0.0 (pagA) anthrax toxin moiety protective antigen [Anthrax toxin (VF0142)] [Bacillus anthracis str. Sterne] Gene pagA has been detected in 50.84% of Bacillus_A anthracis genomes (212 of 417 genomes queried)