Mercurial > repos > greg > p_chunks
comparison p_chunks.xml @ 3:e6fc152a2462 draft default tip
Uploaded
| author | greg |
|---|---|
| date | Tue, 28 Mar 2023 14:17:59 +0000 |
| parents | 66c368ee50fe |
| children |
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| 2:66c368ee50fe | 3:e6fc152a2462 |
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| 27 </inputs> | 27 </inputs> |
| 28 <outputs> | 28 <outputs> |
| 29 <data name="output_plasmids" format="tsv" label="${tool.name} on ${on_string} (plasmids)"/> | 29 <data name="output_plasmids" format="tsv" label="${tool.name} on ${on_string} (plasmids)"/> |
| 30 </outputs> | 30 </outputs> |
| 31 <tests> | 31 <tests> |
| 32 <!-- Tests are not possible due to file size requirements --> | 32 <test> |
| 33 <param name="plasmid_psl" value="input.psl" ftype="psl"/> | |
| 34 <param name="plasmid_database" value="input.blastdbn" ftype="blastdbn"/> | |
| 35 <output name="output_plasmids" value="output.tsv" ftype="tsv"/> | |
| 36 </test> | |
| 33 </tests> | 37 </tests> |
| 34 <help> | 38 <help> |
| 35 **What it does** | 39 **What it does** |
| 36 | 40 |
| 37 Accepts a PSL file and a BLAST database of the associated plasmid sequences and produces a tabular file containing query name, | 41 Accepts a PSL file and a BLAST database of the associated plasmid sequences and produces a tabular file containing query name, |