--- a/pima_report.py	Thu Apr 20 18:10:58 2023 +0000
+++ b/pima_report.py	Thu Apr 20 18:47:01 2023 +0000
@@ -542,7 +542,7 @@
                 contig_title = 'Alignment to %s' % contig
                 self.doc.new_line()
                 self.doc.new_header(level=3, title=contig_title)
-                self.doc.new_line('Blue indicates aligned sequences (to the reference) and yellow indicates missing sequences')
+                self.doc.new_line('Blue color indicates query sequences aligned to the reference sequence, which is shown in yellow')
                 self.doc.new_line(self.doc.new_inline_image(text='contig_title', path=os.path.abspath(circos_file)))
                 self.doc.new_line('<div style="page-break-after: always;"></div>')
                 self.doc.new_line()
@@ -714,7 +714,7 @@
             amr_deletions = amr_deletions.loc[amr_deletions['type'].isin(['large-deletion', 'any']), :]
         self.doc.new_line()
         self.doc.new_header(level=2, title=self.large_indel_title)
-        self.doc.new_line('This section is informative only when your idolates were identified as *Bacillus anthracis* strains')
+        self.doc.new_line('This section is informative only when your isolates were identified as *Bacillus anthracis* strains')
         for genome in ['Reference insertions', 'Query insertions']:
             genome_indels = large_indels[genome].copy()
             self.doc.new_line()