Mercurial > repos > greg > plant_tribes_assembly_post_processor

comparison macros.xml @ 6:c197d5306cd6 draft

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author greg
date Thu, 30 Aug 2018 09:40:24 -0400
parents b0d9dc3c8535
children ade62ce0029b
comparison
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5:2732db7dd0ef 6:c197d5306cd6
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <macros> 2 <macros>
3 <token name="@WRAPPER_VERSION@">1.0</token> 3 <token name="@WRAPPER_VERSION@">1.0</token>
4 <xml name="param_method"> 4 <xml name="param_method">
5 <param name="method" type="select" label="Protein clustering method"> 5 <param name="method" type="select" label="Protein clustering method" dynamic_options="get_clustering_method_options(scaffold)"/>
6 <option value="gfam" selected="true">GFam</option>
7 <option value="orthofinder">OrthoFinder</option>
8 <option value="orthomcl">OrthoMCL</option>
9 </param>
10 </xml> 6 </xml>
11 <xml name="param_scaffold"> 7 <xml name="param_scaffold">
12 <param name="scaffold" type="select" label="Gene family scaffold"> 8 <param name="scaffold" type="select" label="Gene family scaffold" refresh_on_change="True">
13 <options from_data_table="plant_tribes_scaffolds" /> 9 <options from_data_table="plant_tribes_scaffolds">
14 <validator type="no_options" message="No PlantTribes scaffolds are available. Use the PlantTribes Scaffolds Download Data Manager tool in Galaxy to install and populate the PlantTribes scaffolds data table." /> 10 <column name="name" index="1"/>
11 <column name="value" index="2"/>
12 <filter type="sort_by" column="1"/>
13 <validator type="no_options" message="No PlantTribes scaffolds are available. Use the PlantTribes Scaffolds Download Data Manager tool in Galaxy to install and populate the PlantTribes scaffolds data table."/>
14 </options>
15 </param> 15 </param>
16 </xml> 16 </xml>
17 <xml name="citation1"> 17 <xml name="citation1">
18 <citation type="bibtex"> 18 <citation type="bibtex">
19 @misc{None, 19 @misc{None,