# HG changeset patch
# User greg
# Date 1529671234 14400
# Node ID 32587f12102c485afa071a5e8026ef642fd542b1
# Parent  2ac7090847f9479c9980b7e38ba587ea58715892
Uploaded

diff -r 2ac7090847f9 -r 32587f12102c gene_family_aligner.xml
--- a/gene_family_aligner.xml	Thu Dec 21 09:14:22 2017 -0500
+++ b/gene_family_aligner.xml	Fri Jun 22 08:40:34 2018 -0400
@@ -15,6 +15,9 @@
     #set name = $i.name
     ln -s $filename $input_dir/$name &&
 #end for
+export TOOLS_DIR=\$(dirname `which GeneFamilyAligner`) &&
+export PASTA_TOOLS_RUNDIR=\$TOOLS_DIR &&
+export PASTA_TOOLS_DEVDIR=\$TOOLS_DIR &&
 GeneFamilyAligner
 --alignment_method $alignment_method
 #if str($alignment_method) == 'pasta':