Mercurial > repos > greg > plant_tribes_gene_family_aligner

changeset 4:d3f8c8b77dbe draft

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Uploaded
author greg
date Thu, 24 Aug 2017 13:18:06 -0400
parents a54d1ecdf5b3
children a73c2e65098e
files .shed.yml gene_family_aligner.xml macros.xml
diffstat 3 files changed, 21 insertions(+), 8 deletions(-) [+]
line wrap: on
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/.shed.yml	Thu Aug 24 13:18:06 2017 -0400
@@ -0,0 +1,13 @@
+name: plant_tribes_gene_family_aligner
+owner: greg
+description: |
+  Contains a tool that integrates de novo assembly sequences with scaffold gene family sequences.
+homepage_url: https://github.com/dePamphilis/PlantTribes
+long_description: |
+  Contains a tool that tool is one of the PlantTribes collection of automated modular analysis pipelines that
+  utilize objective classifications of complete protein sequences from sequenced plant genomes to perform
+  comparative evolutionary studies.  This tool aligns gene family sequences.
+remote_repository_url: https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/plant_tribes/gene_family_aligner
+type: unrestricted
+categories:
+- Phylogenetics
--- a/gene_family_aligner.xml	Tue Aug 08 13:35:50 2017 -0400
+++ b/gene_family_aligner.xml	Thu Aug 24 13:18:06 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="plant_tribes_gene_family_aligner" name="GeneFamilyAligner" version="@WRAPPER_VERSION@.0">
+<tool id="plant_tribes_gene_family_aligner" name="GeneFamilyAligner" version="@WRAPPER_VERSION@.2">
     <description>aligns integrated orthologous gene family clusters</description>
     <macros>
         <import>macros.xml</import>
--- a/macros.xml	Tue Aug 08 13:35:50 2017 -0400
+++ b/macros.xml	Thu Aug 24 13:18:06 2017 -0400
@@ -3,37 +3,37 @@
     <token name="@WRAPPER_VERSION@">1.0</token>
     <xml name="requirements_assembly_post_processor">
         <requirements>
-            <requirement type="package" version="1.0.0">plant_tribes_assembly_post_processor</requirement>
+            <requirement type="package" version="1.0.2">plant_tribes_assembly_post_processor</requirement>
         </requirements>
     </xml>
     <xml name="requirements_gene_family_aligner">
         <requirements>
-            <requirement type="package" version="1.0.0">plant_tribes_gene_family_aligner</requirement>
+            <requirement type="package" version="1.0.2">plant_tribes_gene_family_aligner</requirement>
         </requirements>
     </xml>
     <xml name="requirements_gene_family_classifier">
         <requirements>
-            <requirement type="package" version="1.0.0">plant_tribes_gene_family_classifier</requirement>
+            <requirement type="package" version="1.0.2">plant_tribes_gene_family_classifier</requirement>
         </requirements>
     </xml>
     <xml name="requirements_gene_family_integrator">
         <requirements>
-            <requirement type="package" version="1.0.0">plant_tribes_gene_family_integrator</requirement>
+            <requirement type="package" version="1.0.2">plant_tribes_gene_family_integrator</requirement>
         </requirements>
     </xml>
     <xml name="requirements_kaks_analysis">
         <requirements>
-            <requirement type="package" version="1.0.0">plant_tribes_kaks_analysis</requirement>
+            <requirement type="package" version="1.0.2">plant_tribes_kaks_analysis</requirement>
         </requirements>
     </xml>
     <xml name="requirements_ks_distribution">
         <requirements>
-            <requirement type="package" version="1.3.0">r-optparse</requirement>
+            <requirement type="package" version="1.3.2">r-optparse</requirement>
         </requirements>
     </xml>
     <xml name="requirements_gene_family_phylogeny_builder">
         <requirements>
-            <requirement type="package" version="1.0.0">plant_tribes_gene_family_phylogeny_builder</requirement>
+            <requirement type="package" version="1.0.2">plant_tribes_gene_family_phylogeny_builder</requirement>
         </requirements>
     </xml>
     <xml name="param_codon_alignments">