Mercurial > repos > greg > plant_tribes_gene_family_classifier
comparison test-data/proteins.both.22Gv1.1.bestOrthos.summary @ 0:f8603464bea7 draft
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| author | greg |
|---|---|
| date | Thu, 08 Jun 2017 12:48:23 -0400 |
| parents | |
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| -1:000000000000 | 0:f8603464bea7 |
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| 1 Gene ID Orthogroup ID Arabidopsis thaliana Thellungiella parvula Carica papaya Theobroma cacao Populus trichocarpa Fragaria vesca Glycine max Medicago truncatula Vitis vinifera Solanum lycopersicum Solanum tuberosum Mimulus guttatus Nelumbo nucifera Aquilegia coerulea Oryza sativa Brachypodium distachyon Sorghum bicolor Musa acuminata Phoenix dactylifera Amborella trichopoda Selaginella moellendorffii Physcomitrella patens SuperOthogroup I1.2 SuperOthogroup I1.5 SuperOthogroup I1.8 SuperOthogroup I2.0 SuperOthogroup I2.5 SuperOthogroup I3.0 SuperOthogroup I3.5 SuperOthogroup I4.0 SuperOthogroup I4.5 SuperOthogroup I5.0 AHRD Descriptions TAIR Gene(s) Descriptions Pfam Domains InterProScan Descriptions GO Molecular Functions GO Biological Processes GO Cellular Components | |
| 2 contig_1 5235 1 1 1 1 1 1 6 1 1 1 3 1 1 1 2 1 1 2 1 1 1 1 2 207 198 330 347 338 461 452 558 557 Protein kinase superfamily protein [1.000] Protein kinase superfamily protein ABC1 (PF03109) [0.968] | APH (PF01636) [0.161] UbiB domain (IPR004147) [0.968] | Aminoglycoside phosphotransferase (IPR002575) [0.161] NULL / Representative annotation below 0.1% NULL / Representative annotation below 0.1% NULL / Representative annotation below 0.1% | |
| 3 contig_10 3494 1 1 1 1 3 1 4 1 0 1 1 1 3 1 3 5 3 3 4 1 0 0 96 177 236 239 529 538 532 524 780 779 RING/U-box superfamily protein [1.000] RING/U-box superfamily protein zf-C3HC4_2 (PF13923) [0.949] | zf-RING_5 (PF14634) [0.026] Zinc finger, RING-type (IPR001841) [0.026] protein binding (GO:0005515) [0.026] | zinc ion binding (GO:0008270) [0.026] NULL / Representative annotation below 0.1% NULL / Representative annotation below 0.1% | |
| 4 contig_2 38889 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 489 741 746 752 773 800 798 1128 1403 1407 6-phosphogluconolactonase 5 [0.500] | 6-phosphogluconolactonase 2 [0.500] Unkown protein(s) / No TAIR description(s) Glucosamine_iso (PF01182) [1.000] Glucosamine/galactosamine-6-phosphate isomerase (IPR006148) [1.000] NULL / Representative annotation below 0.1% carbohydrate metabolic process (GO:0005975) [1.000] NULL / Representative annotation below 0.1% |