Mercurial > repos > greg > plant_tribes_gene_family_classifier

comparison gene_family_classifier.xml @ 5:fd170580a6c9 draft

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author greg
date Tue, 21 Aug 2018 11:24:26 -0400
parents 3e10a2683769
children e813f9537cb2
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4:79adf9087193 5:fd170580a6c9
88 --hmmscan_log '$output_hmmscan_log' 88 --hmmscan_log '$output_hmmscan_log'
89 #end if 89 #end if
90 ]]></command> 90 ]]></command>
91 <inputs> 91 <inputs>
92 <param name="input" format="fasta" type="data" label="Proteins fasta file"/> 92 <param name="input" format="fasta" type="data" label="Proteins fasta file"/>
93 <param name="scaffold" type="select" label="Gene family scaffold"> 93 <expand macro="param_scaffold" />
94 <options from_data_table="plant_tribes_scaffolds" />
95 <validator type="no_options" message="No PlantTribes scaffolds are available. Use the PlantTribes Scaffolds Download Data Manager tool in Galaxy to install and populate the PlantTribes scaffolds data table."/>
96 </param>
97 <param name="method" type="select" label="Protein clustering method"> 94 <param name="method" type="select" label="Protein clustering method">
98 <option value="gfam" selected="true">GFam</option> 95 <option value="gfam" selected="true">GFam</option>
99 <option value="orthofinder">OrthoFinder</option> 96 <option value="orthofinder">OrthoFinder</option>
100 <option value="orthomcl">OrthoMCL</option> 97 <option value="orthomcl">OrthoMCL</option>
101 </param> 98 </param>