# HG changeset patch
# User greg
# Date 1513865747 18000
# Node ID 8ef8997aaa0c09a25e2e52b3c69388b1cdf0799e
# Parent  276f0f31ddb03b5158435f8d55ccd80bf9b44ed1
Uploaded

diff -r 276f0f31ddb0 -r 8ef8997aaa0c gene_family_integrator.xml
--- a/gene_family_integrator.xml	Mon Oct 30 09:53:09 2017 -0400
+++ b/gene_family_integrator.xml	Thu Dec 21 09:15:47 2017 -0500
@@ -18,7 +18,11 @@
 --orthogroup_fasta '$input_dir'
 --scaffold '$scaffold.fields.path'
 --method $method
-&>proc.log
+&>gene_family_integrator_log.txt;
+if [[ $? -ne 0 ]]; then
+    cp gene_family_integrator_log.txt integratedGeneFamilies_dir;
+    exit 1;
+fi
     ]]></command>
     <inputs>
         <param name="input" format="fasta" type="data_collection" collection_type="list" label="Classified orthogroup fasta files" />