Mercurial > repos > greg > plant_tribes_gene_family_phylogeny_builder

comparison gene_family_phylogeny_builder.xml @ 7:c088c185f63f draft

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author greg
date Thu, 21 Dec 2017 09:16:25 -0500
parents a7867769a706
children 994e90ae9217
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6:a7867769a706 7:c088c185f63f
40 --bootstrap_replicates $bootstrap_replicates 40 --bootstrap_replicates $bootstrap_replicates
41 #end if 41 #end if
42 --min_orthogroup_size $min_orthogroup_size 42 --min_orthogroup_size $min_orthogroup_size
43 --max_orthogroup_size $max_orthogroup_size 43 --max_orthogroup_size $max_orthogroup_size
44 --num_threads \${GALAXY_SLOTS:-4} 44 --num_threads \${GALAXY_SLOTS:-4}
45 &>proc.log 45 &>gene_family_phylogeny_builder_log.txt;
46 if [[ $? -ne 0 ]]; then
47 find geneFamilyPhylogenies_dir -type d -maxdepth 1 -exec cp gene_family_phylogeny_builder_log.txt {} \;
48 exit 1;
49 fi
46 ]]></command> 50 ]]></command>
47 <inputs> 51 <inputs>
48 <param name="input" format="fasta" type="data_collection" collection_type="list" label="Proteins orthogroup alignments" /> 52 <param name="input" format="fasta" type="data_collection" collection_type="list" label="Proteins orthogroup alignments" />
49 <conditional name="tree_inference_cond"> 53 <conditional name="tree_inference_cond">
50 <param name="tree_inference" type="select" label="Phylogenetic inference method"> 54 <param name="tree_inference" type="select" label="Phylogenetic inference method">