Mercurial > repos > greg > plant_tribes_gene_family_phylogeny_builder

comparison gene_family_phylogeny_builder.xml @ 12:13d2d138e0e2 draft default tip

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"planemo upload for repository https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/phylogenetics/plant_tribes/gene_family_phylogeny_builder commit f1998b1af463af68d71cb4697fc4e1fa471cdd5a"
author greg
date Tue, 20 Jul 2021 20:29:00 +0000
parents 800402ed6eb7
children
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11:800402ed6eb7 12:13d2d138e0e2
1 <tool id="plant_tribes_gene_family_phylogeny_builder" name="GeneFamilyPhylogenyBuilder" version="@WRAPPER_VERSION@.3.1" profile="18.09"> 1 <tool id="plant_tribes_gene_family_phylogeny_builder" name="GeneFamilyPhylogenyBuilder" version="@WRAPPER_VERSION@.4.1" profile="18.09">
2 <description>builds phylogenetic trees of aligned orthologous gene family clusters</description> 2 <description>builds phylogenetic trees of aligned orthologous gene family clusters</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="1.0.3">plant_tribes_gene_family_phylogeny_builder</requirement> 7 <requirement type="package" version="1.0.4">plant_tribes_gene_family_phylogeny_builder</requirement>
8 </requirements> 8 </requirements>
9 <code file="get_clustering_methods.py"/> 9 <code file="get_clustering_methods.py"/>
10 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
11 #set input_dir = 'input_dir' 11 #set input_dir = 'input_dir'
12 #set tree_inference = $tree_inference_cond.tree_inference 12 #set tree_inference = $tree_inference_cond.tree_inference
92 <element name="3722.faa.aln" value="3722.faa.aln"/> 92 <element name="3722.faa.aln" value="3722.faa.aln"/>
93 </collection> 93 </collection>
94 </param> 94 </param>
95 <param name="tree_inference" value="fasttree"/> 95 <param name="tree_inference" value="fasttree"/>
96 <output_collection name="tree" type="list"> 96 <output_collection name="tree" type="list">
97 <element name="3722.faa.aln.tree" file="3722.faa.aln.tree" ftype="newick"/> 97 <element name="3722.faa.aln.tree" file="3722.faa.aln.tree" ftype="newick" compare="contains"/>
98 </output_collection> 98 </output_collection>
99 </test> 99 </test>
100 </tests> 100 </tests>
101 <help> 101 <help>
102 This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary 102 This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary