Mercurial > repos > greg > plant_tribes_gene_family_scaffold_loader

comparison gene_family_scaffold_loader.xml @ 1:794951c24c86 draft

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author greg
date Mon, 01 Oct 2018 13:36:28 -0400
parents 6282484a52bc
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0:6282484a52bc 1:794951c24c86
5 </macros> 5 </macros>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/gene_family_scaffold_loader.py' 7 python '$__tool_directory__/gene_family_scaffold_loader.py'
8 --database_connection_string '$__app__.config.plant_tribes_database_connection' 8 --database_connection_string '$__app__.config.plant_tribes_database_connection'
9 --output '$output' 9 --output '$output'
10 --scaffold_path '$GALAXY_DATA_INDEX_DIR/plant_tribes/scaffolds/$scaffold' 10 --scaffold_path '$GALAXY_DATA_INDEX_DIR/plant_tribes/scaffolds/$scaffold']]></command>
11 --output '$output']]></command>
12 <inputs> 11 <inputs>
13 <expand macro="param_scaffold" /> 12 <expand macro="param_scaffold" />
14 </inputs> 13 </inputs>
15 <outputs> 14 <outputs>
16 <data name="output" format="txt"/> 15 <data name="output" format="txt"/>