Mercurial > repos > greg > plant_tribes_ks_distribution

comparison ks_distribution.xml @ 4:bb9f29c4a770 draft

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author greg
date Mon, 30 Oct 2017 09:55:03 -0400
parents f5bdcd2729cc
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3:f5bdcd2729cc 4:bb9f29c4a770
1 <tool id="ks_distribution" name="KsDistribution" version="@WRAPPER_VERSION@.2"> 1 <tool id="ks_distribution" name="KsDistribution" version="@WRAPPER_VERSION@.3.0">
2 <description>plots the distribution of synonymous substitution (Ks) rates and fits significant component(s)</description> 2 <description>plots the distribution of synonymous substitution (Ks) rates and fits significant component(s)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements_ks_distribution" /> 6 <requirements>
7 <requirement type="package" version="1.3.2">r-optparse</requirement>
8 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
8 Rscript '$__tool_directory__/ks_distribution.R' 10 Rscript '$__tool_directory__/ks_distribution.R'
9 -k '$input' 11 -k '$input'
10 -c '$components' 12 -c '$components'
11 -n $components.metadata.number_comp 13 -n $components.metadata.number_comp
19 -s '$specified_colors' 21 -s '$specified_colors'
20 #end if 22 #end if
21 ]]></command> 23 ]]></command>
22 <inputs> 24 <inputs>
23 <param name="input" format="tabular" type="data" label="KaKsAnalysis tabular file" /> 25 <param name="input" format="tabular" type="data" label="KaKsAnalysis tabular file" />
24 <param name="components" format="ptkscmp" type="data" label="Significant components" /> 26 <param name="components" format="tabular" type="data" label="Significant components" />
25 <conditional name="choose_colors_cond"> 27 <conditional name="choose_colors_cond">
26 <param name="choose_colors" type="select" label="Choose colors for significant components"> 28 <param name="choose_colors" type="select" label="Choose colors for significant components">
27 <option value="no" selected="true">No</option> 29 <option value="no" selected="true">No</option>
28 <option value="yes">Yes</option> 30 <option value="yes">Yes</option>
29 </param> 31 </param>