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0
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1 Assembly contig1 contig2
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2 # contigs (>= 0 bp) 3 1
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3 # contigs (>= 1000 bp) 3 1
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4 Total length (>= 0 bp) 6710 6650
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5 Total length (>= 1000 bp) 6710 6650
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6 # contigs 3 1
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7 Largest contig 3980 6650
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8 Total length 6710 6650
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9 Reference length 6650 6650
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10 GC (%) 51.28 52.00
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11 Reference GC (%) 52.00 52.00
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12 N50 3980 6650
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13 NG50 3980 6650
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14 N90 1120 6650
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15 NG90 1120 6650
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16 auN 2934.0 6650.0
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17 auNG 2960.4 6650.0
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18 L50 1 1
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19 LG50 1 1
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20 L90 3 1
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21 LG90 3 1
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22 # total reads 330 330
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23 # left 0 0
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24 # right 0 0
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25 Mapped (%) 2.73 2.42
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26 Reference mapped (%) 2.42 2.42
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27 Properly paired (%) 0.0 0.0
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28 Reference properly paired (%) 0.0 0.0
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29 Avg. coverage depth 0 1
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30 Reference avg. coverage depth 1 1
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31 Coverage >= 1x (%) 42.22 48.17
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32 Reference coverage >= 1x (%) 48.17 48.17
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33 # misassemblies 0 0
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34 # misassembled contigs 0 0
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35 Misassembled contigs length 0 0
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36 # local misassemblies 0 0
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37 # scaffold gap ext. mis. 0 0
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38 # scaffold gap loc. mis. 0 0
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39 # unaligned mis. contigs 0 0
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40 # unaligned contigs 0 + 1 part 0 + 0 part
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41 Unaligned length 1950 0
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42 Genome fraction (%) 71.579 100.000
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43 Duplication ratio 1.000 1.000
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44 # N's per 100 kbp 0.00 0.00
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45 # mismatches per 100 kbp 0.00 0.00
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46 # indels per 100 kbp 0.00 0.00
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47 Largest alignment 2030 6650
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48 Total aligned length 4760 6650
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49 NA50 1610 6650
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50 NGA50 1610 6650
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51 NA90 - 6650
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52 NGA90 - 6650
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53 auNA 1187.4 6650.0
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54 auNGA 1198.1 6650.0
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55 LA50 2 1
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56 LGA50 2 1
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57 LA90 - 1
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58 LGA90 - 1
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