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comparison test-data/test5.tab @ 0:5367786dc871 draft default tip

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author greg
date Tue, 14 Mar 2023 15:21:14 +0000
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-1:000000000000 0:5367786dc871
1 Assembly contig1 contig2
2 # contigs (>= 0 bp) 3 1
3 # contigs (>= 1000 bp) 3 1
4 Total length (>= 0 bp) 6710 6650
5 Total length (>= 1000 bp) 6710 6650
6 # contigs 3 1
7 Largest contig 3980 6650
8 Total length 6710 6650
9 Reference length 6650 6650
10 GC (%) 51.28 52.00
11 Reference GC (%) 52.00 52.00
12 N50 3980 6650
13 NG50 3980 6650
14 N90 1120 6650
15 NG90 1120 6650
16 auN 2934.0 6650.0
17 auNG 2960.4 6650.0
18 L50 1 1
19 LG50 1 1
20 L90 3 1
21 LG90 3 1
22 # total reads 330 330
23 # left 0 0
24 # right 0 0
25 Mapped (%) 2.73 2.42
26 Reference mapped (%) 2.42 2.42
27 Properly paired (%) 0.0 0.0
28 Reference properly paired (%) 0.0 0.0
29 Avg. coverage depth 0 1
30 Reference avg. coverage depth 1 1
31 Coverage >= 1x (%) 42.22 48.17
32 Reference coverage >= 1x (%) 48.17 48.17
33 # misassemblies 0 0
34 # misassembled contigs 0 0
35 Misassembled contigs length 0 0
36 # local misassemblies 0 0
37 # scaffold gap ext. mis. 0 0
38 # scaffold gap loc. mis. 0 0
39 # unaligned mis. contigs 0 0
40 # unaligned contigs 0 + 1 part 0 + 0 part
41 Unaligned length 1950 0
42 Genome fraction (%) 71.579 100.000
43 Duplication ratio 1.000 1.000
44 # N's per 100 kbp 0.00 0.00
45 # mismatches per 100 kbp 0.00 0.00
46 # indels per 100 kbp 0.00 0.00
47 Largest alignment 2030 6650
48 Total aligned length 4760 6650
49 NA50 1610 6650
50 NGA50 1610 6650
51 NA90 - 6650
52 NGA90 - 6650
53 auNA 1187.4 6650.0
54 auNGA 1198.1 6650.0
55 LA50 2 1
56 LGA50 2 1
57 LA90 - 1
58 LGA90 - 1