--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test3.log	Tue Mar 14 15:21:14 2023 +0000
@@ -0,0 +1,67 @@
+/home/laptop/miniconda3/envs/mulled-v1-92b15e9954bc988dbc8d54298d41c8a76a5ff384441fcf564162dec5c1c0faf0/bin/quast --labels contigs1_fna,contigs2_fna -o outputdir --eukaryote --min-identity 95.0 --min-contig 500 --min-alignment 65 --ambiguity-usage one --ambiguity-score 0.99 --local-mis-size 200 --contig-thresholds 0,1000,500 --extensive-mis-size 1000 --scaffold-gap-max-size 1000 --unaligned-part-size 500 --skip-unaligned-mis-contigs --x-for-Nx 90 /tmp/tmphjbhe4x0/files/0/2/b/dataset_02bce539-33f0-4693-bfe9-a92ebf1615f8.dat /tmp/tmphjbhe4x0/files/6/0/2/dataset_60253425-26a2-4019-bae6-07285864be68.dat --threads 1
+
+Version: 5.2.0
+
+System information:
+  OS: Linux-5.13.0-51-generic-x86_64-with-glibc2.31 (linux_64)
+  Python version: 3.9.13
+  CPUs number: 8
+
+Started: 2022-07-07 16:55:02
+
+Logging to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/quast.log
+WARNING: --ambiguity-usage was set to 'all' because not default --ambiguity-score was specified
+
+CWD: /tmp/tmphjbhe4x0/job_working_directory/000/15/working
+Main parameters: 
+  MODE: default, threads: 1, eukaryotic: true, min contig length: 500, min alignment length: 65, \
+  min alignment IDY: 95.0, ambiguity: all, min local misassembly length: 200, min extensive misassembly length: 1000
+
+Contigs:
+  Pre-processing...
+  1  /tmp/tmphjbhe4x0/files/0/2/b/dataset_02bce539-33f0-4693-bfe9-a92ebf1615f8.dat ==> contigs1_fna
+  2  /tmp/tmphjbhe4x0/files/6/0/2/dataset_60253425-26a2-4019-bae6-07285864be68.dat ==> contigs2_fna
+
+2022-07-07 16:55:11
+Running Basic statistics processor...
+  Contig files: 
+    1  contigs1_fna
+    2  contigs2_fna
+  Calculating N50 and L50...
+    1  contigs1_fna, N50 = 3980, L50 = 1, auN = 2934.0, Total length = 6710, GC % = 51.28, # N's per 100 kbp =  0.00
+    2  contigs2_fna, N50 = 6650, L50 = 1, auN = 6650.0, Total length = 6650, GC % = 52.00, # N's per 100 kbp =  0.00
+  Drawing Nx plot...
+    saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/basic_stats/Nx_plot.pdf
+  Drawing cumulative plot...
+    saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/basic_stats/cumulative_plot.pdf
+  Drawing GC content plot...
+    saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/basic_stats/GC_content_plot.pdf
+  Drawing contigs1_fna GC content plot...
+    saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/basic_stats/contigs1_fna_GC_content_plot.pdf
+  Drawing contigs2_fna GC content plot...
+    saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/basic_stats/contigs2_fna_GC_content_plot.pdf
+Done.
+
+NOTICE: Genes are not predicted by default. Use --gene-finding or --glimmer option to enable it.
+
+2022-07-07 16:55:13
+Creating large visual summaries...
+This may take a while: press Ctrl-C to skip this step..
+  1 of 2: Creating PDF with all tables and plots...
+  2 of 2: Creating Icarus viewers...
+Done
+
+2022-07-07 16:55:14
+RESULTS:
+  Text versions of total report are saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/report.txt, report.tsv, and report.tex
+  Text versions of transposed total report are saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
+  HTML version (interactive tables and plots) is saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/report.html
+  PDF version (tables and plots) is saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/report.pdf
+  Icarus (contig browser) is saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/icarus.html
+  Log is saved to /tmp/tmphjbhe4x0/job_working_directory/000/15/working/outputdir/quast.log
+
+Finished: 2022-07-07 16:55:14
+Elapsed time: 0:00:11.737584
+NOTICEs: 1; WARNINGs: 1; non-fatal ERRORs: 0
+
+Thank you for using QUAST!