Mercurial > repos > greg > quast
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author | greg |
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date | Tue, 14 Mar 2023 15:21:14 +0000 |
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<macros> <token name="@TOOL_VERSION@">5.2.0</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">21.01</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">quast</requirement> <requirement type="package" version="0.7.17">bwa</requirement> <requirement type="package" version="2.30.0">bedtools</requirement> </requirements> </xml> <xml name="bio_tools"> <xrefs> <xref type="bio.tools">quast</xref> </xrefs> </xml> <xml name="gene_thresholds"> <param name="gene_thresholds" argument="--gene-thresholds" type="text" value="0,300,1500,3000" label="Comma-separated list of thresholds (in bp) for gene lengths to find with a finding tool"/> </xml> <xml name="citations"> <citations> <citation type="doi">10.1093/bioinformatics/bty266</citation> <citation type="doi">10.1093/bioinformatics/btw379</citation> <citation type="doi">10.1093/bioinformatics/btv697</citation> <citation type="doi">10.1093/bioinformatics/btt086</citation> </citations> </xml> <xml name="min_identity_macros" token_value=""> <param argument="--min-identity" type="float" value="@VALUE@" min="80" max="100" label="Minimum IDY% considered as proper alignment" help="Alignments with IDY% worse than this value will be filtered. Note that all alignments with IDY% less than 80.0% will be filtered regardless of this threshold. "/> </xml> </macros>