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comparison queue_genotype_workflow.xml @ 9:0ed7dc418a6d draft

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author greg
date Wed, 22 Jan 2020 08:48:41 -0500
parents aa6274d3b20e
children 560dcf3f9f3d
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8:aa6274d3b20e 9:0ed7dc418a6d
58 </tests> 58 </tests>
59 <help> 59 <help>
60 **What it does** 60 **What it does**
61 61
62 Uses the Galaxy/Bioblend API to execute the complete multilocus genotype analysis pipeline for corals or symbionts. 62 Uses the Galaxy/Bioblend API to execute the complete multilocus genotype analysis pipeline for corals or symbionts.
63 Read this <a href="https://github.com/gregvonkuster/galaxy_tools/blob/master/docs/corals/coralsnp_tutorial.md" target="_blank">tutorial</a> 63 Read this tutorial_ if you are not familiar with this tool. This tool must be able to access the corals (stag) database.
64 if you are not familiar with this tool. This tool must be able to access the corals (stag) database. 64
65 .. _tutorial: https://github.com/gregvonkuster/galaxy_tools/blob/master/docs/corals/coralsnp_tutorial.md
65 66
66 **Required options** 67 **Required options**
67 68
68 * **Affymetrix 96 well plate metadata file** - a tabular file created by the user to describe their samples - it can be exported from Excel using this example as a template: http://baumslab.org/documents/SNPChip/STAG_Metadata_Template_v3.xlsm 69 * **Affymetrix 96 well plate metadata file** - a tabular file created by the user to describe their samples - it can be exported from Excel using this example as a template: http://baumslab.org/documents/SNPChip/STAG_Metadata_Template_v3.xlsm
69 * **Sample attributes file** - the Sample Attributes tabular file created by the Affymetrix sequencer for the plate 70 * **Sample attributes file** - the Sample Attributes tabular file created by the Affymetrix sequencer for the plate