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comparison queue_genotype_workflow.xml @ 7:fd38595afbf3 draft

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author greg
date Wed, 22 Jan 2020 08:26:09 -0500
parents b7212fe2d597
children aa6274d3b20e
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6:b7212fe2d597 7:fd38595afbf3
58 </tests> 58 </tests>
59 <help> 59 <help>
60 **What it does** 60 **What it does**
61 61
62 Uses the Galaxy/Bioblend API to execute the complete multilocus genotype analysis pipeline for corals or symbionts. 62 Uses the Galaxy/Bioblend API to execute the complete multilocus genotype analysis pipeline for corals or symbionts.
63 This tool must be able to access the corals (stag) database. 63 Read this tutorial https://github.com/gregvonkuster/galaxy_tools/blob/master/docs/corals/coralsnp_tutorial.md if you
64 are not familiar with this tool. This tool must be able to access the corals (stag) database.
64 65
65 **Required options** 66 **Required options**
66 67
67 * **Affymetrix 96 well plate metadata file** - a tabular file created by the user to describe their samples - it can be exported from Excel using this example as a template: http://baumslab.org/documents/SNPChip/STAG_Metadata_Template_v3.xlsm 68 * **Affymetrix 96 well plate metadata file** - a tabular file created by the user to describe their samples - it can be exported from Excel using this example as a template: http://baumslab.org/documents/SNPChip/STAG_Metadata_Template_v3.xlsm
68 * **Sample attributes file** - the Sample Attributes tabular file created by the Affymetrix sequencer for the plate 69 * **Sample attributes file** - the Sample Attributes tabular file created by the Affymetrix sequencer for the plate