Mercurial > repos > greg > queue_genotype_workflow
comparison queue_genotype_workflow.py @ 14:f2c12986e5d4 draft default tip
Uploaded
| author | greg |
|---|---|
| date | Tue, 25 Jan 2022 14:17:11 +0000 |
| parents | 0882b7bb3dfc |
| children |
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| 13:b5ca9d62c7bb | 14:f2c12986e5d4 |
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| 425 # Get the FilterAllGenotypedSamples workflow | 425 # Get the FilterAllGenotypedSamples workflow |
| 426 fags_workflow_id, fags_workflow_dict = get_workflow(gi, fags_workflow_name, outputfh) | 426 fags_workflow_id, fags_workflow_dict = get_workflow(gi, fags_workflow_name, outputfh) |
| 427 outputfh.write("\nFilterAllGenotypedSamples workflow id: %s\n" % str(fags_workflow_id)) | 427 outputfh.write("\nFilterAllGenotypedSamples workflow id: %s\n" % str(fags_workflow_id)) |
| 428 # Map the history datasets to the input datasets for | 428 # Map the history datasets to the input datasets for |
| 429 # the FilterAllGenotypedSamples workflow. | 429 # the FilterAllGenotypedSamples workflow. |
| 430 history_datasets = get_history_datasets(gi, args.history_id) | |
| 430 fags_workflow_input_datasets = get_workflow_input_datasets(gi, history_datasets, fags_workflow_name, fags_workflow_dict, outputfh) | 431 fags_workflow_input_datasets = get_workflow_input_datasets(gi, history_datasets, fags_workflow_name, fags_workflow_dict, outputfh) |
| 431 # Start the FilterAllGenotypedSamples workflow. | 432 # Start the FilterAllGenotypedSamples workflow. |
| 432 start_workflow(gi, fags_workflow_id, fags_workflow_name, fags_workflow_input_datasets, None, args.history_id, outputfh) | 433 start_workflow(gi, fags_workflow_id, fags_workflow_name, fags_workflow_input_datasets, None, args.history_id, outputfh) |
| 433 outputfh.write("\nSleeping for 15 seconds...\n") | 434 outputfh.write("\nSleeping for 15 seconds...\n") |
| 434 time.sleep(15) | 435 time.sleep(15) |