0
+ − 1 <tool id="validate_affy_metadata" name="Validate Affymetrix metadata" version="1.0.0">
+ − 2 <description>for 96 well plate</description>
+ − 3 <command detect_errors="exit_code"><![CDATA[
+ − 4 python '$__tool_directory__/validate_affy_metadata.py'
+ − 5 --input '$input'
+ − 6 --output '$output']]></command>
+ − 7 <inputs>
+ − 8 <param name="input" type="data" format="tabular" label="Affymetrix 96 well plate metadata file">
1
+ − 9 <validator type="expression" message="96 well plate data must have 32 columns"><![CDATA[value is not None and value.metadata.columns==32]]></validator>
0
+ − 10 </param>
+ − 11 </inputs>
+ − 12 <outputs>
+ − 13 <data name="output" format="tabular"/>
+ − 14 </outputs>
+ − 15 <tests>
+ − 16 <test>
+ − 17 <param name="input" value="affy_metadata.tabular" ftype="tabular"/>
+ − 18 <output name="output" file="affy_metadata.tabular" ftype="tabular"/>
+ − 19 </test>
+ − 20 </tests>
+ − 21 <help>
+ − 22 **What it does**
+ − 23
1
+ − 24 Validates an Affymetrix metadata file for 96 well plate data consisting of 32 columns.
0
+ − 25 The tool will output the input file if it is valid.
+ − 26
+ − 27 -----
+ − 28
+ − 29 **Columns**
+ − 30
+ − 31 * user_specimen_id
+ − 32 * field_call
+ − 33 * bcoral_genet_id
+ − 34 * bsym_genet_id
+ − 35 * reef
+ − 36 * region
+ − 37 * latitude
+ − 38 * longitude
+ − 39 * geographic_origin
+ − 40 * colony_location
+ − 41 * depth
+ − 42 * disease_resist
+ − 43 * bleach_resist
+ − 44 * mortality
+ − 45 * tle
+ − 46 * spawning
+ − 47 * collector_last_name
+ − 48 * collector_first_name
+ − 49 * org
+ − 50 * collection_date
+ − 51 * contact_email
+ − 52 * seq_facility
+ − 53 * array_version
+ − 54 * public
+ − 55 * public_after_date
+ − 56 * sperm_motility
+ − 57 * healing_time
+ − 58 * dna_extraction_method
+ − 59 * dna_concentration
+ − 60 * registry_id
+ − 61 * result_folder_name
+ − 62 * plate_barcode
+ − 63 </help>
+ − 64 <citations>
5
+ − 65 <citation type="doi">https://doi.org/10.1038/s41598-020-69101-z</citation>
0
+ − 66 </citations>
+ − 67 </tool>
+ − 68
